Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59990 679 / 0 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 679 / 0 MAP2A methionine aminopeptidase 2A (.1) AT3G51800 103 / 3e-24 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027121 [exp] 512 / 0 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 393 / 1e-136 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 276 / 6e-90 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10003379 [exp] 89 / 1e-18 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 85 / 1e-17 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 84 / 2e-17 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 83 / 5e-17 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 54 / 1e-07 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133200 [exp] 672 / 0 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.004G084800 [exp] 662 / 0 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.006G102200 [exp] 100 / 9e-23 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 95 / 3e-21 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [flax] [poplar] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Lus10000403 pacid=23146196 polypeptide=Lus10000403 locus=Lus10000403.g ID=Lus10000403.BGIv1.0 annot-version=v1.0 ATGATGGTTGATGAAAGTTTGAAGCAACAACTCTCTAATAATGAAGAGAATGGCATTGAGAAAAAGAGTGGGAGTTTAGAACCTTCTGTTAGCAACGAGA ATGACGAATGTTCTTCTGGGTTAATGGATGATGATGAAAAGAAAGAAGCATCAAAGAAGAAGAAGAAGAAAAATAATAGCAAGAAGAAGAAGGAACCCCC TCAGCAAATTGATCCACCCTCTATTCCTGTTGCTGACCTATTCCCTTCTGGAGAGTTTCCAGAGGGTGAAAGCCAACAATACAAAGATGATAACTTATGG CGTACAACTTCTGATGAGAAGAGAGAATTGGAGCGCTTGGAGAAGCCGATATATGATTCAGTTAGACAAGCTGCAGAAGTTCATAGACAGGTTCGTAAAT ATATTAAAAGCATTTTGAAGTCTGGAAAGCTAATGATCGACATTTGCGAGACGTTGGAAAATATGGTTCGTAAGCTAATATCTGAAAATGGTCTCCAAGC TGGAATTCCCTTTCCTACCGGATGCTCGCTGAACTGGGTTGGTGCTCATTGGACTCCAAATTCTGGTGACAAGATAGTGCTTCAGTATGATGATGTAATG AAGTTGGACTTTGGTACCCATATAGATGGATATATAGTGGACAGTGCCTTTACTGTGGCATTCAATCCCATGTTTGATCCGCTGCTTGAAGCTTCACTTG AGGCTACCTACACTGGTATTAAGGAAGCTGGAATTGATGTGCGTCTCTGTGATGTTGGTGCTGCAATACAAGAGGTCATGGAGTCGTATGAGGTTGAAAT AAATGGAAAGGTGTTTCAAGTTAAAAGCATTAGAAACTTGAATGGACATGGCATTGGGCGTTATAAAATTCATGCTGGAAAATCAGTTCCCAATGTGAAA GGAGGGGAGCAGGCTAAGATGGAAGAGGGTGAATTTTATGCAATTGAAACATTCGGATCCACAGGAAAAGGATATATCAGAGAAGATCTGGAATGCAGTC ATTACATGAAAGACTATGAAGTCGGGCATGTGCCATTGAGGATGGCAAGAGCCAAGCAGCTGCTAGCAACAATAGACAATAACTTTTCGACCTTAGCCTT CTGTAGACGGTACTTGGACCGCCTCGGTGAAACCAAGTACTTGATGGCGCTGAAGAATTTATGTGATGCTGGCATTGTTCAGCTCTGCCCTCCTGTGTGC GATGTTAAAGGCAGGTATATATCCCAGTTTGAACATACGATCTTGCTCCGGCCGACCTGCAAAGAGGTAATTTCTAAAGGAGATTACTACTAA
AA sequence Show only first row Show all	>Lus10000403 pacid=23146196 polypeptide=Lus10000403 locus=Lus10000403.g ID=Lus10000403.BGIv1.0 annot-version=v1.0 MMVDESLKQQLSNNEENGIEKKSGSLEPSVSNENDECSSGLMDDDEKKEASKKKKKKNNSKKKKEPPQQIDPPSIPVADLFPSGEFPEGESQQYKDDNLW RTTSDEKRELERLEKPIYDSVRQAAEVHRQVRKYIKSILKSGKLMIDICETLENMVRKLISENGLQAGIPFPTGCSLNWVGAHWTPNSGDKIVLQYDDVM KLDFGTHIDGYIVDSAFTVAFNPMFDPLLEASLEATYTGIKEAGIDVRLCDVGAAIQEVMESYEVEINGKVFQVKSIRNLNGHGIGRYKIHAGKSVPNVK GGEQAKMEEGEFYAIETFGSTGKGYIREDLECSHYMKDYEVGHVPLRMARAKQLLATIDNNFSTLAFCRRYLDRLGETKYLMALKNLCDAGIVQLCPPVC DVKGRYISQFEHTILLRPTCKEVISKGDYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	1.0	0.9535
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	1.4	0.9527
					Lus10021689 [exp]	1.7	0.9511
AT5G26610			D111/G-patch domain-containing...		Lus10001513 [exp]	2.0	0.9393
AT3G11290			unknown protein		Lus10002039 [exp]	3.0	0.9291
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	4.9	0.9337
AT1G09050			unknown protein		Lus10037506 [exp]	5.1	0.9241
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	5.3	0.9222
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	7.9	0.9327
AT4G02715			unknown protein		Lus10014679 [exp]	8.1	0.8943

Compare expression of checked genes

Lus10000403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.