Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56170 144 / 1e-44 LLG1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) AT2G20700 129 / 2e-38 LLG2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (.1) AT4G26466 128 / 3e-38 LRE lorelei (.1) AT4G28280 126 / 1e-37 LLG3 LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027120 [exp] 144 / 3e-44 AT5G56170 179 / 3e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000404 [exp] 139 / 2e-42 AT5G56170 180 / 2e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033695 [exp] 108 / 6e-31 AT5G56170 135 / 2e-41 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033694 [exp] 99 / 6e-27 AT5G56170 140 / 2e-43 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000089 [exp] 95 / 1e-25 AT5G56170 127 / 2e-38 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031643 [exp] 86 / 1e-21 AT5G56170 98 / 2e-28 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10010587 [exp] 86 / 1e-21 AT5G56170 99 / 2e-26 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031642 [exp] 79 / 3e-19 AT4G26466 84 / 2e-21 lorelei (.1) Lus10033696 [exp] 76 / 5e-18 AT4G26466 83 / 9e-21 lorelei (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471500 [exp] 157 / 2e-49 AT5G56170 183 / 8e-60 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.011G168500 [exp] 150 / 1e-46 AT5G56170 171 / 9e-55 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.019G095200 [exp] 128 / 3e-38 AT5G56170 153 / 7e-48 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.013G132000 [exp] 124 / 7e-37 AT5G56170 159 / 2e-50 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000405 pacid=23146195 polypeptide=Lus10000405 locus=Lus10000405.g ID=Lus10000405.BGIv1.0 annot-version=v1.0 ATGATGAATGGGTGGAATTGGACAAGTTCTGGGTCGTCCATCTGTTTCTTTTTGTTTATTCTCACTTGTTCCTCTGCTACCATTTCCGTTTCAGATGCTG TCTTCCAAGCTCCTGCTGCTACATCAAGGAATCTGCTTCAAGCCAAAAAATCATGTTCAGTAAGCTTCGAGTACCTGAACTACACATCCATAACGAGCCG ATGCAGAGGACCGGACTATCTTCCCGAAGAATGCTGCCCCGCATTCAAGGATTTCGCCTGCCCTTACGCAGAACTGTTGAATGACGTGAGCAACGACTGT GCGTCGGCCATGTTCAGCTACCTTAACATCAATGGTGGATACCCACCTGGTCTTTTCGCCAACCAGTGCAGAGAAGGCATACACGATGGCCTTGCTTGTC CTCCACTCTCATCTGCAAGCTCCTTACTGTCAATTCTTCAACTTTCATTGCTCGCAACTGCTTCACTGCTTCTGCTGATTCACTACTAG
AA sequence Show only first row Show all	>Lus10000405 pacid=23146195 polypeptide=Lus10000405 locus=Lus10000405.g ID=Lus10000405.BGIv1.0 annot-version=v1.0 MMNGWNWTSSGSSICFFLFILTCSSATISVSDAVFQAPAATSRNLLQAKKSCSVSFEYLNYTSITSRCRGPDYLPEECCPAFKDFACPYAELLNDVSNDC ASAMFSYLNINGGYPPGLFANQCREGIHDGLACPPLSSASSLLSILQLSLLATASLLLLIHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	0	1
					Lus10014735 [exp]	1.7	0.7645
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	2.6	0.7358
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10018372 [exp]	3.2	0.8096
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10029167 [exp]	4.5	0.7177
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	5.7	0.7556
					Lus10014003 [exp]	6.6	0.7841
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10011955 [exp]	10.0	0.7546
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	10.4	0.7082
					Lus10029497 [exp]	14.7	0.5975
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	21.9	0.7424

Compare expression of checked genes

Lus10000405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.