Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57500 154 / 2e-46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000372 [exp] 221 / 3e-72 AT5G57500 300 / 2e-101 Galactosyltransferase family protein (.1) Lus10006531 [exp] 169 / 4e-53 AT5G57500 202 / 1e-64 Galactosyltransferase family protein (.1) Lus10006963 [exp] 159 / 4e-48 AT5G57500 470 / 2e-168 Galactosyltransferase family protein (.1) Lus10019998 [exp] 157 / 4e-47 AT5G57500 475 / 3e-170 Galactosyltransferase family protein (.1) Lus10015527 [exp] 156 / 7e-47 AT5G57500 473 / 2e-169 Galactosyltransferase family protein (.1) Lus10025474 [exp] 91 / 3e-23 AT5G57500 199 / 4e-64 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G131000 [exp] 202 / 1e-64 AT5G57500 289 / 2e-96 Galactosyltransferase family protein (.1) Potri.018G094000 [exp] 159 / 3e-48 AT5G57500 493 / 3e-177 Galactosyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000407 pacid=23180862 polypeptide=Lus10000407 locus=Lus10000407.g ID=Lus10000407.BGIv1.0 annot-version=v1.0 ATGATTGTCATAATAGACATCAAATTTGTATTCTGCAATCTCACAAAGCATGAACATAGGGTGCTTGTGGGTCTAGAAATACTTCGTTTCAACGACATCA GAATCCTTGACTGCACTGAGAATATGAACAATGGGAAGACCTACACCTACTTCTCTTCCCTACCCCATATTTTGGAGCAACGTTATGACTATGTAATGAA AGCTGACGATGATGTTTACCTTAGGCTTCACCCATTGTCATCTTCGTTATACCCATTGCCAAGGTACGATTTGTACTATGGTTTTGTTATCCCTTGCAAT AGCATGAACCCGTTTGTTGAGTACATGTCAGGAATGGGGTTCTTACTGTCTTGGGATCTTGTCGAATGGATTAGCAGCTCGAGAATTCCTGCAAATGACA CACTTGGCCCCGAAGATAAGTTAGTTGGAAAATGGTTGAAAGTTGGAGGGAAAGGCAAGAACAGGTTTCTAATAAACCAGCCATGTACGACTATCAAGGG ACCAATGGTAGGTGTTCCCACGAGCTTATACCTGAGACCATTGCAGTTCACCGGCTGA
AA sequence Show only first row Show all	>Lus10000407 pacid=23180862 polypeptide=Lus10000407 locus=Lus10000407.g ID=Lus10000407.BGIv1.0 annot-version=v1.0 MIVIIDIKFVFCNLTKHEHRVLVGLEILRFNDIRILDCTENMNNGKTYTYFSSLPHILEQRYDYVMKADDDVYLRLHPLSSSLYPLPRYDLYYGFVIPCN SMNPFVEYMSGMGFLLSWDLVEWISSSRIPANDTLGPEDKLVGKWLKVGGKGKNRFLINQPCTTIKGPMVGVPTSLYLRPLQFTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	0	1
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042321 [exp]	1.7	0.8903
					Lus10029790 [exp]	2.8	0.8890
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	4.2	0.8716
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10018845 [exp]	8.7	0.8498
AT5G36930			Disease resistance protein (TI...		Lus10018972 [exp]	9.2	0.8762
AT4G02030			Vps51/Vps67 family (components...		Lus10036541 [exp]	10.7	0.8380
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	12.2	0.8866
					Lus10040954 [exp]	15.5	0.8889
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	16.8	0.8852
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	17.9	0.8659

Compare expression of checked genes

Lus10000407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.