Plant FIBer expression Database

Lus10000409 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006533
[exp]
223 / 1e-72 AT1G17450 101 / 1e-23 B-block binding subunit of TFIIIC (.1.2)
Lus10015661
[exp]
159 / 1e-44 AT1G17450 598 / 0.0 B-block binding subunit of TFIIIC (.1.2)
Lus10037675
[exp]
156 / 1e-43 AT1G17450 1340 / 0.0 B-block binding subunit of TFIIIC (.1.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10000409 pacid=23180861 polypeptide=Lus10000409 locus=Lus10000409.g ID=Lus10000409.BGIv1.0 annot-version=v1.0
ATGAGAGGTTTCATGATCTGGTCTCTAGGTTTGGGATGCATTGTCAGGCAGAAAACCACAAAAAACACTGCTGTATACAGGTATTGGACTTCTGCTAATT
ATAACCCGCAAACTTCTGCTGGACTTCCTGCTTCAGCTTTTCGTCCCTTCCGTATCAGTAATCCTGATCAATCCACTAAATTCTCTTCAATGAATAATCA
TTTGATTTCTGGAATTGACTGCACTGACTCAAGAAATTTAAGTGGTGGACGAGAAGATACAGAATCTCCCAAGTTTCTCAAAGATGGTAAAGCAAACTCT
GGCCAGGTGCCGACCATTGACCATGTATCAAGTGGAGCAGCATCTAGTGGTGGACTTGATTTGGTTTGTGTAGATGTTGAATCAAATGGTGCTTCATCAG
AAACATGCCAGATTAGTTTGTTGAAGCAACCGTCTGTGCATCAAACACCTTTAACTACCGATAATTCACTGCGGGAGCAAAGAATACTTGAGCACGTACA
GAGGTCTACTGGTGGAGGTGCATCGACCTCCAACCCTGCCTATGGTGAGACCTCAACCCCTAACCCTACTGGAGGTGATGCCTCAAATGGTGGACGTGTA
CGTTCTGCCACCATAACAATGCCTACTATGGGATCAGCGGAGGTGCAAGGGGCATTCATGCCAACAACTTTTTACTCAAGTTACTAG
AA sequence
>Lus10000409 pacid=23180861 polypeptide=Lus10000409 locus=Lus10000409.g ID=Lus10000409.BGIv1.0 annot-version=v1.0
MRGFMIWSLGLGCIVRQKTTKNTAVYRYWTSANYNPQTSAGLPASAFRPFRISNPDQSTKFSSMNNHLISGIDCTDSRNLSGGREDTESPKFLKDGKANS
GQVPTIDHVSSGAASSGGLDLVCVDVESNGASSETCQISLLKQPSVHQTPLTTDNSLREQRILEHVQRSTGGGASTSNPAYGETSTPNPTGGDASNGGRV
RSATITMPTMGSAEVQGAFMPTTFYSSY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000409
[exp]
0 1
Lus10001309
[exp]
2.2 0.9005
AT3G51620 PAP/OAS1 substrate-binding dom... Lus10006095
[exp]
4.2 0.8947
AT4G13750 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597... Lus10016661
[exp]
6.3 0.8884
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Lus10043456
[exp]
8.3 0.8944
AT5G20490 XI-17, ATXIK, X... MYOSIN XI-17, MYOSIN XI K, Myo... Lus10003315
[exp]
8.9 0.8907
AT3G04490 unknown protein Lus10022024
[exp]
11.0 0.8743
AT5G61140 U5 small nuclear ribonucleopro... Lus10040524
[exp]
13.0 0.8871
AT3G29390 RIK RS2-interacting KH protein (.1... Lus10015384
[exp]
13.0 0.8507
AT2G47980 SCC3, ATSCC3 sister-chromatid cohesion prot... Lus10008306
[exp]
14.0 0.8831
AT5G49880 mitotic checkpoint family prot... Lus10007439
[exp]
14.4 0.8702

Lus10000409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.