Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14250 217 / 2e-68 RING/U-box superfamily protein (.1) AT3G53690 201 / 3e-62 RING/U-box superfamily protein (.1) AT5G37560 145 / 9e-40 RING/U-box superfamily protein (.1) AT4G19670 139 / 7e-37 RING/U-box superfamily protein (.1.2) AT3G45470 117 / 2e-31 IBR domain containing protein (.1) AT2G25360 120 / 5e-31 RING/U-box superfamily protein (.1) AT2G21420 122 / 7e-31 IBR domain containing protein (.1) AT3G45580 120 / 1e-30 RING/U-box protein with C6HC-type zinc finger (.1) AT5G60250 120 / 5e-30 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 117 / 5e-29 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026104 [exp] 586 / 0 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10024093 [exp] 296 / 6e-100 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10038341 [exp] 132 / 2e-34 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036128 [exp] 127 / 1e-32 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036202 [exp] 126 / 4e-32 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10022063 [exp] 114 / 2e-29 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10036127 [exp] 110 / 1e-26 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042610 [exp] 102 / 1e-24 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1) Lus10022064 [exp] 76 / 7e-17 AT3G14250 78 / 2e-18 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037200 [exp] 322 / 7e-110 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 308 / 3e-104 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 197 / 6e-60 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 141 / 3e-40 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 130 / 2e-35 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 128 / 6e-35 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.006G104700 [exp] 130 / 1e-33 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.015G117600 [exp] 129 / 4e-33 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.012G119000 [exp] 125 / 9e-32 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G150100 [exp] 117 / 4e-29 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10000412 pacid=23154554 polypeptide=Lus10000412 locus=Lus10000412.g ID=Lus10000412.BGIv1.0 annot-version=v1.0 ATGTCCCAGTCACAGCAGATTCTACTCCAGACGGAGGAATCTCTCCCTCAGCCCACCTTCTCCGATCTCAATTTCGTCGACGATTCCTACTTCGTTTCAC TCTTCAACGACGATGAACAAGACGGCGCCGCCGGCGCCGCATTGGTGATTCATCAACCACTACAACAAGTCGAGGAAGACGACGAACTGCGGAAGATCGT CTTCCCTGTCTCCGACGCCAAATACGCCGAGGGATTGCAGGTCCAAGAGGCTCTAGTCGGTTCATTCGCTCTCTCCCACGCCACTCCCGAAATCGATTTT CTTCCTGTAGGCTCCATGGTCATGGAGTCAGAGGCGATTGAGATCCATGGGAAGCGGATGAAGGTTGTGGACGCCGAAAAAGACGATCAAGAGGAAGGAG AATCTTCGCTGAGCTTCTGCGAGATTTGCGCGGAGAGGAAAGAGCCCGAACACATGCTGAAAATCGGCGGCGGGTGCTCGCACGCTTCCTACTGCTCCGA TTGCATATCCCGCCACGTGACGACTAAAGTCAGTGACAGCGTCGTCACGGTGACCTGCCCTGCGGCGGGGTGCGGGACGGTGCTGGAGCTTGAAACCTGC CGGCCGGTGCTCCCGAAGCGAGTGATCGAACAGTGGGAGGAGGTTCTCTGTCGGGAGCTGATTGGAGAATCGCAGAGGTATTACTGCCCGTTCAGGGACT GCTCTACAATGCTGCTAGTGGAAGCCGAGGAGGAAATGATTCGTGAATCGGAGTGCCCGTACTGCCACAGGCTGTTCTGCGCACAGTGCGGGGTGCCGTG GCATTCAGGAGTTGATTGCGAGGCGTTCCAGAATCTGGGGCAAGACGAGAGAGGGAGGGAAGATATAATGGTGATGGAAATGGCCAAGAGCAACAAGTGG AGTCGATGCCCTCGCTGTATGTTCTATGTTGAGAGAACTGAAGGCTGCCCTCACATCACTTGCAGGTGCAAGTATGAGTTCTGCTATGGATGTGGAGCTG AGTGGAACAAGAATCATGGTGGGTGTACCAGAGAGTAA
AA sequence Show only first row Show all	>Lus10000412 pacid=23154554 polypeptide=Lus10000412 locus=Lus10000412.g ID=Lus10000412.BGIv1.0 annot-version=v1.0 MSQSQQILLQTEESLPQPTFSDLNFVDDSYFVSLFNDDEQDGAAGAALVIHQPLQQVEEDDELRKIVFPVSDAKYAEGLQVQEALVGSFALSHATPEIDF LPVGSMVMESEAIEIHGKRMKVVDAEKDDQEEGESSLSFCEICAERKEPEHMLKIGGGCSHASYCSDCISRHVTTKVSDSVVTVTCPAAGCGTVLELETC RPVLPKRVIEQWEEVLCRELIGESQRYYCPFRDCSTMLLVEAEEEMIRESECPYCHRLFCAQCGVPWHSGVDCEAFQNLGQDERGREDIMVMEMAKSNKW SRCPRCMFYVERTEGCPHITCRCKYEFCYGCGAEWNKNHGGCTRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14250			RING/U-box superfamily protein...		Lus10000412 [exp]	0	1
					Lus10008678 [exp]	2.4	0.7534
					Lus10009381 [exp]	3.2	0.7993
					Lus10004635 [exp]	6.9	0.7256
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	8.2	0.7156
					Lus10040835 [exp]	10.5	0.7143
AT2G29880			unknown protein		Lus10005028 [exp]	12.0	0.6581
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	12.1	0.7025
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	13.8	0.6110
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10037341 [exp]	14.5	0.7083
					Lus10008679 [exp]	14.8	0.6011

Compare expression of checked genes

Lus10000412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.