Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 475 / 7e-170 Galactose mutarotase-like superfamily protein (.1) AT3G61610 396 / 2e-138 Galactose mutarotase-like superfamily protein (.1) AT5G14500 384 / 7e-134 aldose 1-epimerase family protein (.1) AT3G01590 384 / 9e-134 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 363 / 9e-126 Galactose mutarotase-like superfamily protein (.1) AT4G25900 338 / 1e-115 Galactose mutarotase-like superfamily protein (.1) AT5G66530 135 / 4e-37 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026106 [exp] 631 / 0 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 561 / 0 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 506 / 0 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 490 / 1e-175 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 409 / 6e-144 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 406 / 2e-142 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 393 / 1e-137 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 392 / 2e-137 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 383 / 2e-133 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037700 [exp] 517 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 514 / 0 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 503 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 498 / 6e-179 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 407 / 1e-142 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 388 / 1e-135 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 380 / 2e-132 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 139 / 2e-38 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 51 / 5e-07 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.019G034100 [exp] 42 / 0.0005 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10000414 pacid=23154551 polypeptide=Lus10000414 locus=Lus10000414.g ID=Lus10000414.BGIv1.0 annot-version=v1.0 ATGTCGATTGTTGGCGGCGGCGGCGGCGGAGGCGAGGAAAACAAATTCGTTGAGTTCTGTAAGGGCGTTAATGGACTCGATAAGGTCATCCTCCGCGAGG TTCGTGGCCATTCCGCCGAGGTTTACCTGAATGGAGGTCAAGTTACATCTTGGAAGAATGAATATAGAGAAGAATTACTATTTCTTAGTAGCAAGGCTGT TTTCAATCCTTCAAAGGCAATAAGAGGAGGTATCCCAATTAGCTTTCCTCAATTCGGAACTCATGGTTCCCTTCAACAACACGGATTTGCAAGAAACACA GTGTGGACGGTTGATAAAGATCCCCCTCCTTTTCCAACAGTTAGTTCCAATAGGGCTTTTGTGGATTTAATACTTAAACCATCTGAGGATGATCCAAAGA GCTGGCCTCACAGATTTGAATTCCGGATAGGGATAGCTCTGGGGCCAGGTGGAGATCTGATGTTGACCTCCCGAATCCGGAATACAGAGACTGACGGGAA ACCTTTTACATTTACCTTTGCCTATAACATCTATTTCTCTGTCACTGATATCAGTGAAGTACGCGTAGAAGGATTAGAGACATTGGACTATCTGGATAAC CTTAAGGACAGGGATCGAGTAACTGAACAAGGCGATGCAATTACATTCGAATCAGAAGTGGACAAACTCTATCTGAGTACTCCAACTAAGATAGCTATTT TGGACCACGAGAGGAAGAGAACGTTCGTGTTGCGGAAAGATGGACTTCCGGATGCCATTGTTTGGAATCCATGGGATAAAAGAGCAAAGGCAATGGTTGA TCTAGGTGACGAGGAGTACAAACATATGCTGTTAATAGGAGCTGCTTGCGTGGAGAAGCCTATAACTTTGAAACCAGGAGAAGAATGGAAAGGAAGACAG GAGCTTTCTGTTGTTCCCTCTAGCTACTGCAGCGGACAACTCGATCCACGGAAGGGTGCTGCTTTTACTGTGAGAACTAGATTCCGATGGAAGAACAGAT CATTGCTGGTGGCTCTAGTTTGGAAGAACAGATCAATACTGGTTAGTGGACTGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10000414 pacid=23154551 polypeptide=Lus10000414 locus=Lus10000414.g ID=Lus10000414.BGIv1.0 annot-version=v1.0 MSIVGGGGGGGEENKFVEFCKGVNGLDKVILREVRGHSAEVYLNGGQVTSWKNEYREELLFLSSKAVFNPSKAIRGGIPISFPQFGTHGSLQQHGFARNT VWTVDKDPPPFPTVSSNRAFVDLILKPSEDDPKSWPHRFEFRIGIALGPGGDLMLTSRIRNTETDGKPFTFTFAYNIYFSVTDISEVRVEGLETLDYLDN LKDRDRVTEQGDAITFESEVDKLYLSTPTKIAILDHERKRTFVLRKDGLPDAIVWNPWDKRAKAMVDLGDEEYKHMLLIGAACVEKPITLKPGEEWKGRQ ELSVVPSSYCSGQLDPRKGAAFTVRTRFRWKNRSLLVALVWKNRSILVSGLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57330			Galactose mutarotase-like supe...		Lus10000414 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	12.6	0.8563
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10028441 [exp]	21.5	0.8170
					Lus10023665 [exp]	27.5	0.8494
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	30.7	0.8561
					Lus10027563 [exp]	86.7	0.7967
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	137.5	0.8092
AT3G06240			F-box family protein (.1)		Lus10018106 [exp]	138.6	0.8059
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001167 [exp]	157.3	0.8119
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	222.7	0.7900
AT1G61670			Lung seven transmembrane recep...		Lus10025218 [exp]	223.4	0.8007

Compare expression of checked genes

Lus10000414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.