Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12660 79 / 1e-17 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 71 / 1e-14 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT5G55730 66 / 9e-13 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 64 / 7e-12 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 61 / 6e-11 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G31370 57 / 7e-10 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT3G60900 55 / 7e-09 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026107 [exp] 249 / 9e-82 AT3G12660 91 / 1e-20 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10041630 [exp] 157 / 5e-46 AT3G12660 86 / 8e-19 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10024089 [exp] 148 / 2e-42 AT3G12660 81 / 4e-17 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Lus10016617 [exp] 67 / 6e-13 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 66 / 2e-12 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 64 / 5e-12 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10026957 [exp] 63 / 7e-12 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10012344 [exp] 63 / 1e-11 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10020158 [exp] 62 / 1e-11 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037800 [exp] 96 / 2e-23 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G005100 [exp] 78 / 2e-17 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G276200 [exp] 75 / 5e-16 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.011G093500 [exp] 70 / 3e-14 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 67 / 4e-13 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G168100 [exp] 61 / 5e-11 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.014G071700 [exp] 60 / 1e-10 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10000415 pacid=23154555 polypeptide=Lus10000415 locus=Lus10000415.g ID=Lus10000415.BGIv1.0 annot-version=v1.0 ATGGCTTCCACATCCACACATCTCCTCATCCTCCTCGTCCTCGCCCTTACCGCTTCCTCATCAGCATTCAATGTCACCAATGTTTTGGGCCCACTGTCTG AGTTCAGCACTTTCTCCAACTACCTGGCTCAGGCTGGAGTCGTCGGAATGATGACAAACCTCAAGAATGTCACCATCCTCGCTGTTGATAACGCCAACAT GGCTCCCATCTCGGGCAAGTCCCTTGCCGAGATCCAGAGGATCATGACCATGCACGTCATTCCCGAGTACTATGACTTGTATCGCTTGAACGCCCTTCAG AATGGCACCGGATTGATCCGCACCGTCTATGCTCAGACCAAATTGGCCAGGGGTAAAGATGGAATGTTGGTTGTGACCAAGAAGGGTAAAATGGGAAGGT TTAGCTTCTCGAGCGCTATCCTCCCTAAATCTAAGCCCGGTGTCAATGTCGTCAAATCCGTCGTCGTTTTGTCTCGGAACATCTCTGTGTTCTACGTCAG CGGCTTGATCGTTACTCCGCCTCCTGTCGTCAGCGTTGCTAGCGACGTCGAGGCCGCCGACATTGATCGTCACTCCTCCCGTCGTCAGCGTCGCTAG
AA sequence Show only first row Show all	>Lus10000415 pacid=23154555 polypeptide=Lus10000415 locus=Lus10000415.g ID=Lus10000415.BGIv1.0 annot-version=v1.0 MASTSTHLLILLVLALTASSSAFNVTNVLGPLSEFSTFSNYLAQAGVVGMMTNLKNVTILAVDNANMAPISGKSLAEIQRIMTMHVIPEYYDLYRLNALQ NGTGLIRTVYAQTKLARGKDGMLVVTKKGKMGRFSFSSAILPKSKPGVNVVKSVVVLSRNISVFYVSGLIVTPPPVVSVASDVEAADIDRHSSRRQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10000415 [exp]	0	1
					Lus10021867 [exp]	27.7	0.6161
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004036 [exp]	32.6	0.6151
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10042030 [exp]	33.6	0.6144
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018034 [exp]	130.2	0.5617
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	189.1	0.5410
					Lus10000178 [exp]	224.6	0.5220
					Lus10020703 [exp]	238.6	0.5103

Compare expression of checked genes

Lus10000415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.