Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79640 753 / 0 Protein kinase superfamily protein (.1.2) AT5G14720 538 / 0 Protein kinase superfamily protein (.1) AT4G10730 493 / 3e-165 Protein kinase superfamily protein (.1) AT4G24100 481 / 7e-161 Protein kinase superfamily protein (.1) AT1G70430 465 / 3e-156 Protein kinase superfamily protein (.1) AT1G23700 323 / 7e-103 Protein kinase superfamily protein (.1) AT4G14480 292 / 1e-90 Protein kinase superfamily protein (.1) AT1G53165 223 / 5e-63 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 221 / 1e-62 Protein kinase superfamily protein (.1) AT1G69220 204 / 1e-55 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026108 [exp] 1274 / 0 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014542 [exp] 544 / 0 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 527 / 3e-179 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 484 / 1e-161 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 483 / 4e-161 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 479 / 1e-157 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 479 / 3e-157 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10021882 [exp] 317 / 6e-100 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 225 / 3e-68 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G037900 [exp] 798 / 0 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 768 / 0 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G349300 [exp] 549 / 0 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 499 / 1e-167 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 498 / 3e-167 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 332 / 2e-105 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 268 / 6e-82 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 267 / 8e-81 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 223 / 4e-63 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 221 / 2e-62 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10000416 pacid=23154553 polypeptide=Lus10000416 locus=Lus10000416.g ID=Lus10000416.BGIv1.0 annot-version=v1.0 ATGGACAGGAAGAAGTACCCGATCGGCCCTGAAAACTATGTCTTGTACGAGGAGATCGGCCAGGGCGTCAGCGCCACCGTCCGTAGAGCTCTCTGTGTCC CCTTCGATGAAATCGTCGCCATTAAGGTCCTCGATTTCGAGCGCGACAACGTCGACTTGGCGAATATTTCCAGGGAGGTGCAAACGATGATATTGGTGGA CCATCCTAATGTTCTGAAATCGCATTGCTCCTTTGTGAGCGACCACAATCTGTGGGTTGTGATGCCGTTCATGGCAGGAGGTTCTTGTCTTCACATATTG AAGGCGGCTTTCCCAGAAGGGTTCGAGGAGGCAGTCATTGCCACCATATTGAAGGAAGTGTTGAAGGGTTTGGAGTATCTTCACCATCATGGCTGCATTC ATCGTGATGTTAAAGCTGGGAACATTCTTATAGATGAGCGTGGCTTAGTAAAGTTGGGAGATTTGGGTGTTTCTGCTTACCTCTTCGGCTCAGGCGATCG ACAACGCATGAGGAATACATTTGTTGGGACTCCTTGCTGGATGGCGCCTGAAGTTATGGAACAATTACATGGATATGACATTAGGGCTGATATTTGGTCT TTCGGAATAACTGCTTTAGAGCTTGCCCATGGGCATGCTCCTTTCTCTAAATATCCTCCCATGAAGGTGTTGCTCATGACTTTGCAAAATGCACCCCCGG GTTTGGACTATGAAAGAGATAAGAAATTCTCTAAATCATTCAAACAGATGATTGCCAGTTGCTTAGTAAAAGATCCTTCAAAACGTCCTTCAGCAAAGAG GTTGTTGAAGCATTCATTTTTCAAGCAAGCCAGGTCCAGTGACTATCTTTCACGGACGATTCTAGAGGGATTACCTGCTCTCGGTGTTCGTATTGAGGCA TTGAAGAGAAAGGAAGAAGATATGCTTGCCGAAAAGAAAATGCCTGATGGTCAGATGGAGGAAATATCACAGAATGAATACAAACGAGGAATTAGTGGTT GGAACTTCAACCTTGACGACATGAAAGCTCAGGCTTCTCTGATACCATACGACGAGATTATAGGTGATAATTTTGAAGTTGGAAGCTCCAGTTGTTTATC AGCACTTGATGGAAATGATAAACAATATGAATGTCAAACCTCTTCTGCCAAACAGCCTACGGAAACGACTGAGATCACGGCTGGTTATCTGGTGCAAAAT CGGCCAGTGCCTCTTCTTTCAGTGAACTCGTCTCTTAGCATTACCAAAATCAGCTGCGAGAGATCTGATGATGAGTGCAGCCTTCCAAGTCCATCTGATT CTGTTTCACAGCTCTGCTCACCTCGATTTAACACCAACGTTGCTGAAAGGCCTACTTTTGAGATAGATACTAAAATTCCTAATGGCATGCCTAATTATTC CGAATCCAAATTGGTAGGACCAGGTAGCCTCAGCTTCAATTTCTGCGAACCTGTTGTTTCGCAAAGCAACAGCTTTGACACCAACATAGATAGATCAGCC ACCCCACTGCCAAGAATCCCATCCAACAATGGTGCCACAGTAGCACTAGATGGTAGCACCGTCCCCCTCGCTGCAAAAGAGTTACAGCATGCAGGGGGTT CAACGGATGAACCCAGCCTCTCTGTGAAACCAAGGGTGATCACTCAGCAACCTGGAATTCCTCTATCGCCAACACCTGAAGCCACTTCCTCAAGTCACCT ACTCAACTCTGTGCTTCCACTTGTACAGTCTGTCTTACAGACAAACATCCTTCAACGAGATGCTATCCTTGGCATAATGAAGCTGCTGTCCAACTCTGAC TCTGCAGGCCTTCGTGCCCCCGACGGAGGATCAATACTACAACTTGCTTCCATGGAGAAATCCTTGATGGAAGCAATGCAAGATAAGGAGAAGGAGTTAG TTCTTGAAGTAACAGACCTAAGATACAGGCTGATATGTGCTCAGGAAGAACTCCAGAAGTACAAAACAGAAACTGCACAGGTGTCGAGTAGCAGCCGGAC GGAGGGAGAACCAGCGCTGCAAATGCGGAACCATGTCAATGGGGTCAATGGAGAAGTTACTGGGAATCAGAGAACAGAGAACGGTAGCATTTCTGCTACC ACCACAGCATCATCAGCGAAGAAGCCTAACATGTTGAGTAGGGTTGTGAGTATGAAGTAG
AA sequence Show only first row Show all	>Lus10000416 pacid=23154553 polypeptide=Lus10000416 locus=Lus10000416.g ID=Lus10000416.BGIv1.0 annot-version=v1.0 MDRKKYPIGPENYVLYEEIGQGVSATVRRALCVPFDEIVAIKVLDFERDNVDLANISREVQTMILVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHIL KAAFPEGFEEAVIATILKEVLKGLEYLHHHGCIHRDVKAGNILIDERGLVKLGDLGVSAYLFGSGDRQRMRNTFVGTPCWMAPEVMEQLHGYDIRADIWS FGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSAKRLLKHSFFKQARSSDYLSRTILEGLPALGVRIEA LKRKEEDMLAEKKMPDGQMEEISQNEYKRGISGWNFNLDDMKAQASLIPYDEIIGDNFEVGSSSCLSALDGNDKQYECQTSSAKQPTETTEITAGYLVQN RPVPLLSVNSSLSITKISCERSDDECSLPSPSDSVSQLCSPRFNTNVAERPTFEIDTKIPNGMPNYSESKLVGPGSLSFNFCEPVVSQSNSFDTNIDRSA TPLPRIPSNNGATVALDGSTVPLAAKELQHAGGSTDEPSLSVKPRVITQQPGIPLSPTPEATSSSHLLNSVLPLVQSVLQTNILQRDAILGIMKLLSNSD SAGLRAPDGGSILQLASMEKSLMEAMQDKEKELVLEVTDLRYRLICAQEELQKYKTETAQVSSSSRTEGEPALQMRNHVNGVNGEVTGNQRTENGSISAT TTASSAKKPNMLSRVVSMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	0	1
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	1.0	0.9134
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	2.4	0.8536
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	2.4	0.8635
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	5.5	0.8246
AT5G14430			S-adenosyl-L-methionine-depend...		Lus10022291 [exp]	5.7	0.8288
AT3G03770			Leucine-rich repeat protein ki...		Lus10020303 [exp]	7.9	0.8298
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	7.9	0.8284
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10017377 [exp]	8.2	0.8514
AT3G26950			unknown protein		Lus10032012 [exp]	9.5	0.7879
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	14.1	0.8388

Compare expression of checked genes

Lus10000416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.