Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 64 / 5e-12 NB-ARC domain-containing disease resistance protein (.1) AT1G58602 48 / 1e-06 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT3G14460 47 / 3e-06 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G50180 47 / 3e-06 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026109 [exp] 192 / 2e-56 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 164 / 1e-46 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 108 / 4e-27 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 63 / 1e-11 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 55 / 1e-08 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 51 / 1e-07 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 49 / 6e-07 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 49 / 7e-07 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 49 / 9e-07 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196100 [exp] 87 / 5e-20 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G194800 [exp] 82 / 5e-18 AT3G14470 622 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 76 / 5e-16 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.001G379700 [exp] 73 / 3e-15 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 71 / 3e-14 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 67 / 3e-13 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015300 [exp] 67 / 6e-13 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 65 / 3e-12 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G029300 [exp] 64 / 9e-12 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G015200 [exp] 63 / 1e-11 AT3G14470 559 / 5e-178 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000417 pacid=23154556 polypeptide=Lus10000417 locus=Lus10000417.g ID=Lus10000417.BGIv1.0 annot-version=v1.0 ATGGAAGTTGTGGCTACTGTCGGTGGTGCTTTGCTTTCTGAATCTTTGAAGCTGCTGATTCAAAAGCTGGGTACCCATGAATTCCTCTTGTATTTTCGTC AAGGAGGAGAAATCCTGGCTGAGCTCAAGATGTGGGAGAATATACTAAGGAAGATCTACGCTGCGCTTGATGATGCTGAGAAGAAACAAATGACTAGCAG GTTGGTGAGCATATGGGTAAGCGAGCTTCGAGACTTGGCTTATGATGCCGAGGATGTGCTTGATTCGTTTTCTACTGAGCAATTGAGGAGGAAGCTTACG GAAGAAGCTGTTTCTTCAAGTACAAGCTTGAGATCAGAGGCGAATGTCCTCATTTCAAAATTCAGTGAGCTTAAGTCTGTATCCAGAGGCCTCAGATGTC TCACCTCTCTGGAGAAGTTGTTGATAATGTACTGCTCAAAGCTTCAGTCTTTACCAAAGCAGGGACTTCCCCCATCACTTGGAAGCTTAGAGCTGCACGC ATATCCTGGTTTGAAGAAAGTCAAGAAACAGTGTCTGAAACAGAAAGGAGAATATTGGCGAGCGATGCAACAGATTCCTTGTGGCAATTGA
AA sequence Show only first row Show all	>Lus10000417 pacid=23154556 polypeptide=Lus10000417 locus=Lus10000417.g ID=Lus10000417.BGIv1.0 annot-version=v1.0 MEVVATVGGALLSESLKLLIQKLGTHEFLLYFRQGGEILAELKMWENILRKIYAALDDAEKKQMTSRLVSIWVSELRDLAYDAEDVLDSFSTEQLRRKLT EEAVSSSTSLRSEANVLISKFSELKSVSRGLRCLTSLEKLLIMYCSKLQSLPKQGLPPSLGSLELHAYPGLKKVKKQCLKQKGEYWRAMQQIPCGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	0	1
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	2.8	0.8024
AT1G55270			Galactose oxidase/kelch repeat...		Lus10043282 [exp]	3.7	0.7533
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034193 [exp]	5.9	0.7564
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	11.0	0.7373
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	12.2	0.7338
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	12.9	0.7696
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	14.7	0.7535
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	14.8	0.7626
AT1G29530			unknown protein		Lus10015254 [exp]	16.7	0.7472
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	17.1	0.7661

Compare expression of checked genes

Lus10000417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.