Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05330 110 / 5e-30 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) AT5G23420 56 / 1e-09 HMGB6 high-mobility group box 6 (.1.2) AT4G35570 40 / 0.0003 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017797 [exp] 261 / 3e-83 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049100 [exp] 152 / 1e-46 AT5G05330 139 / 3e-41 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) Potri.007G000900 [exp] 46 / 3e-06 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000418 pacid=23163521 polypeptide=Lus10000418 locus=Lus10000418.g ID=Lus10000418.BGIv1.0 annot-version=v1.0 ATGGCGAACCAGGCCAGAAAACGCAAAAGGGTTTACGCCATTCCTCGCCGTGCTCCCGATGGAAGCGCCTTTCAGCGATGCGGGAAGTGTGGGGTTTCGG TAGCGATTGCTCTTTCTGATCTACACGAATGCGGAAACAGCATCTCCAAACGAGATGTCAAGAGATTCAGAGGCTGTTTCTCTCATCGCAACTTATCCAT GAGAGAAACCCTCAACGGTCAGCCATTATCGCCGTTCCGATACTTCATGGAAAGTTTCGGAAAGAGTAGTGGTTCTGGGAATCCAGTTGATGTTGACAAT AAAGGGTTTGAGACTTGGAAGACTATGTCAAAGGAGGAGAGGCAGCCTTATATTGATCATGCTCAAAGGGTGAATTCTGCTTACTTTAAACGTTGGACTG ACGAGATTCGTTCCTGCATGCTCAAGGTGGACGATGAGGCTGATTCACTCAAGTTCATGAAGTTTGATATGGGTGATTGCAGCGACGAGTATGGTGGCTC TGATAGTTACGAATGTAAAGGAGGTGGTAGCTCCCTCAACAACTGGGAACGGTACACTTGGTTGCTCACAGTCTATCGTAGTTAG
AA sequence Show only first row Show all	>Lus10000418 pacid=23163521 polypeptide=Lus10000418 locus=Lus10000418.g ID=Lus10000418.BGIv1.0 annot-version=v1.0 MANQARKRKRVYAIPRRAPDGSAFQRCGKCGVSVAIALSDLHECGNSISKRDVKRFRGCFSHRNLSMRETLNGQPLSPFRYFMESFGKSSGSGNPVDVDN KGFETWKTMSKEERQPYIDHAQRVNSAYFKRWTDEIRSCMLKVDDEADSLKFMKFDMGDCSDEYGGSDSYECKGGGSSLNNWERYTWLLTVYRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05330			HMG-box (high mobility group) ...		Lus10000418 [exp]	0	1
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	1.4	0.9554
AT5G13500			unknown protein		Lus10009691 [exp]	5.7	0.9321
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	6.8	0.9400
AT1G72690			unknown protein		Lus10015607 [exp]	13.2	0.9245
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	16.0	0.9329
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	18.0	0.9335
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	18.7	0.9300
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	23.7	0.9323
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	25.4	0.9331
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	25.6	0.9181

Compare expression of checked genes

Lus10000418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.