Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16807 66 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010996 [exp] 441 / 1e-155 AT4G16807 66 / 3e-12 unknown protein Lus10010995 [exp] 267 / 4e-88 AT4G16807 54 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080700 [exp] 77 / 6e-15 AT4G16807 117 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000419 pacid=23142585 polypeptide=Lus10000419 locus=Lus10000419.g ID=Lus10000419.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGCTCGACTGATTCCGCAGGTTTTCATTCTTCGGATTCGTTCTCGATTCCTTCAGAGCCTCCTGATATAAGGAACTGGTTTTCCAGCTACA AGTATGAACCTTTTATTCTGGATACTTGCGATGATGCATTCGGAACGAAAGCTCGAGGTGATGCTGTTGCTAATGATTCAGAGAAAATTACGGAAAACGA TGTGGATTCGAGTGAGCCCTTGAAAATTGAAGAAGGCCAGACTTTCAGTGAGGTGCCAGATTTTTCGTACTCGCAGGCATTCCTTAATGAACCTCATCAT CCTGATAACTGGCTTTCGACTTGTGTACCCGAGACTTATGGACTCGACCTTGATGGTGATGATGTGGAATTCGAGACTGCTCCTGGTGAAGGCAAAGTTG ATGCATTTTCCAACAAAGGTATCGAGAATCTTGAGAAGTCGAACAGCAAAAGCAGTGATTTGGAGACACATGAAAGGCCTTCTTCAGATGAGTTGTTTAT GAATGAGTGGAACCCTTCACAGGAGGTTCCAGACTCTTCATATTCACAGTCAGTTCTTCGAGAACCTCATCATCCTGATAACTGGATTTCTACCTGTGTA CCCGAGACCTGTGGATTCGATCTCAAGGAAGATGAGTTCCGTCAGGCCAAGAAAGATGTCTTTGACAAGGAAGGGATCGAAAAGCCTTCTTCAGATGAGA TAGTCAATGAAGAAAAAAGACCTTCACAGAAGGAGAATTTGGCTCCGTATTCTCAGGTTTCGATTCTTTCGGAGCCGCCTGAGATTAAGAATTGGTTCTC CAGCTATGCTTATGAATCTCCTGAATTGGATGAAGAAATCAACAATGGAGGAGTTTTTTATTCTGAGTCTCAACGTGTAGACAACAGCTTCATTGACCAA GAACCAAAGGAAGATGAAGAATTGAACTCCCAGAGCATAGATAAGGAACCAAGCACAAAGCTGACTCCTGACGAACATTCAGCTTCATCCTTGAAACCAG CAGGATCAACTGAACCCTCTTCAACCAGTGGCTTTGTGACAACAAGGAAGAACAAGTCCACTAAACGACCGAACCACAACGAGAATTCATACCCCGGATC GACACAACATGCTGCAGCAAAGTGCCTCAAGAGTGAGAGGCTGGTGATCAGTTCTTCAAGGAACAGGAATGTGTTATCAGAAAGAACAAATGTAGTTCTG CAGCCTCAGCCTGAGGTCACTGGGAAATGGAAATGCCCTCAGAGAAATAAACCAGTTATGGGACCTCCTCTGAAGCAGCTAAGACTAGAGAGATGGGTTA CTAAGCTGTGA
AA sequence Show only first row Show all	>Lus10000419 pacid=23142585 polypeptide=Lus10000419 locus=Lus10000419.g ID=Lus10000419.BGIv1.0 annot-version=v1.0 MEESSTDSAGFHSSDSFSIPSEPPDIRNWFSSYKYEPFILDTCDDAFGTKARGDAVANDSEKITENDVDSSEPLKIEEGQTFSEVPDFSYSQAFLNEPHH PDNWLSTCVPETYGLDLDGDDVEFETAPGEGKVDAFSNKGIENLEKSNSKSSDLETHERPSSDELFMNEWNPSQEVPDSSYSQSVLREPHHPDNWISTCV PETCGFDLKEDEFRQAKKDVFDKEGIEKPSSDEIVNEEKRPSQKENLAPYSQVSILSEPPEIKNWFSSYAYESPELDEEINNGGVFYSESQRVDNSFIDQ EPKEDEELNSQSIDKEPSTKLTPDEHSASSLKPAGSTEPSSTSGFVTTRKNKSTKRPNHNENSYPGSTQHAAAKCLKSERLVISSSRNRNVLSERTNVVL QPQPEVTGKWKCPQRNKPVMGPPLKQLRLERWVTKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16807			unknown protein		Lus10000419 [exp]	0	1
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10000420 [exp]	2.0	0.8595
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10014274 [exp]	5.2	0.8405
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	30.2	0.8252
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	34.0	0.8394
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	34.9	0.8141
					Lus10000578 [exp]	81.0	0.7912
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	88.3	0.8110
AT3G22490			Seed maturation protein (.1)		Lus10006121 [exp]	103.9	0.7640
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	104.2	0.7928
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024295 [exp]	122.4	0.7940

Compare expression of checked genes

Lus10000419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.