Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16800 156 / 1e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G60550 54 / 2e-08 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT3G06860 43 / 9e-05 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 41 / 0.0005 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT5G43280 40 / 0.0009 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010994 [exp] 293 / 7e-100 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10029142 [exp] 51 / 3e-07 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10013023 [exp] 50 / 3e-07 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10006501 [exp] 41 / 0.0004 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 41 / 0.0005 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10019396 [exp] 41 / 0.0006 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153300 [exp] 208 / 1e-66 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.003G080800 [exp] 139 / 3e-40 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G329900 [exp] 55 / 8e-09 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.008G220400 [exp] 44 / 8e-05 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 43 / 0.0001 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.001G061000 [exp] 40 / 0.0006 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10000420 pacid=23142581 polypeptide=Lus10000420 locus=Lus10000420.g ID=Lus10000420.BGIv1.0 annot-version=v1.0 ATGACTACCAGTGGCGCTAAGGTTTTGCTCACTGAAGAACGTAACTGCAAAGAAAAAATGGGAGCTCTACGGACGACTACGCGATCCTTGATCCGCCATT ACTCGAAGAATCCAGCAGCCCTCCGCCTTATATCGCTACCAAACTCGGCGAGCACTGATCTTGGAGCCGTTATCTTCCGGATCAGTCCAGGTCCGGCGTC TCTCCGATGCCGATTCCGGCCGGAAGCGAGGAACGCGATCGGGGGCGAGATGCTGCGAGGATTGAGGCATACTTTCGAGACGCTTGAGACGGATGATGAA GCAAACGTCGTTATGATCTCTAGCCCCGTTCCCAAGGCCTTCTGCGCTGGTGCTGATTTGAAGGAACTCAAGAAAATGACTGTATCAGAAGTTCAGTTCT TTGTCCATACACTTCGTTCGACATTTGAACTCATAGAGAGATCTCACTGGGCTGGAGGGACTCAGAGACTGCCTCGAATCGTGGGCAAATCAGTGGCGAA AGAACTCATATTTACTGGCCGTAGGATCGGAGGCAAAGAGGCTATGTCGATCGGGCTAGCCAATTATACAGTGCCTGCTTGGACAGCTCGTACAAAAACA CTCGAAGTTGCTCGAGAAATCAACCAGAAGGGACCAGTAGCGATCAGGTTGGCGAAGAAGGCCATCGACGAGGGGATCCAAATGGACATGGAATGA
AA sequence Show only first row Show all	>Lus10000420 pacid=23142581 polypeptide=Lus10000420 locus=Lus10000420.g ID=Lus10000420.BGIv1.0 annot-version=v1.0 MTTSGAKVLLTEERNCKEKMGALRTTTRSLIRHYSKNPAALRLISLPNSASTDLGAVIFRISPGPASLRCRFRPEARNAIGGEMLRGLRHTFETLETDDE ANVVMISSPVPKAFCAGADLKELKKMTVSEVQFFVHTLRSTFELIERSHWAGGTQRLPRIVGKSVAKELIFTGRRIGGKEAMSIGLANYTVPAWTARTKT LEVAREINQKGPVAIRLAKKAIDEGIQMDME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10000420 [exp]	0	1
AT4G16807			unknown protein		Lus10000419 [exp]	2.0	0.8595
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	12.6	0.8842
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	21.3	0.8699
AT1G16760			Protein kinase protein with ad...		Lus10042205 [exp]	27.8	0.8297
AT5G04910			unknown protein		Lus10028878 [exp]	27.9	0.8376
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	29.3	0.8581
					Lus10039025 [exp]	31.4	0.8549
AT5G66240			Transducin/WD40 repeat-like su...		Lus10021575 [exp]	38.7	0.8364
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	41.9	0.8215
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	46.6	0.8349

Compare expression of checked genes

Lus10000420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.