Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 96 / 4e-23 RLK1 receptor-like protein kinase 1 (.1) AT1G61380 44 / 3e-05 SD1-29 S-domain-1 29 (.1) AT1G11330 44 / 3e-05 S-locus lectin protein kinase family protein (.1.2) AT1G65800 40 / 0.0007 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010992 [exp] 173 / 3e-50 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10040160 [exp] 159 / 6e-46 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 159 / 3e-45 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 100 / 9e-25 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 100 / 1e-24 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 95 / 8e-23 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 95 / 1e-22 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031228 [exp] 93 / 1e-22 AT5G60900 161 / 2e-44 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 61 / 9e-11 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212000 [exp] 120 / 1e-31 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G153800 [exp] 120 / 1e-31 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 112 / 6e-29 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 98 / 5e-24 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 98 / 8e-24 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014401 [exp] 94 / 9e-23 AT5G60900 280 / 2e-86 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 93 / 5e-22 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 92 / 1e-21 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 92 / 1e-21 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 90 / 4e-21 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10000422 pacid=23142583 polypeptide=Lus10000422 locus=Lus10000422.g ID=Lus10000422.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCTTATTGTTCATCTTGTTCTTCAGTTCATCTTATTTCCTCTCCTCAATCTCAATCCCACCACAGCAAATGTAACCTTGAGCTCATCCC TCACAGCCAGTTTCAACTCGGTTTGGGAATTGCCTTCCGTAGACTTCGCATTCAGATTCAGCCAGCTCAACTCGAGCTCCGACAGGTTCCTCCTATCAAT CCGGTTCAACAAGATCCCCAGCCGAACGATTGTCTGGCACACGAATGGAGAAACCCCTGTGCCGAAAGGATCGAGGGCCGTACTAACTTCATCCGGCCTC GCCCTGACCGATCCTGGAGGGGAACTTGTGTGGCAAGCAACATCATCGTTGAGCATTTCGTACGCTTCGATGTTGGACACTGGGAATTTTGTCCTTGTAA GTAACATTTCTTCTTCTTCAAGCTACCTACGGGAAAGCCTCAACAATCCTAAGGATACTATATTGCCGAACCAGACTGTCCAGTGCTGTTCTGTTCTCGA AGCTAACCGAGTCAAACTACTCGAGAGGGAGGTTCGCGCTTCGGTTCTCTAA
AA sequence Show only first row Show all	>Lus10000422 pacid=23142583 polypeptide=Lus10000422 locus=Lus10000422.g ID=Lus10000422.BGIv1.0 annot-version=v1.0 MASSLIVHLVLQFILFPLLNLNPTTANVTLSSSLTASFNSVWELPSVDFAFRFSQLNSSSDRFLLSIRFNKIPSRTIVWHTNGETPVPKGSRAVLTSSGL ALTDPGGELVWQATSSLSISYASMLDTGNFVLVSNISSSSSYLRESLNNPKDTILPNQTVQCCSVLEANRVKLLEREVRASVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	0	1
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	3.5	0.8788
					Lus10039759 [exp]	4.6	0.9056
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	6.0	0.8152
					Lus10040066 [exp]	6.9	0.8934
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	10.4	0.8327
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	12.4	0.8262
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	14.7	0.8482
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	16.4	0.7580
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	21.6	0.8475
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	22.7	0.8067

Compare expression of checked genes

Lus10000422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.