Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07270 150 / 2e-39 Cell division control, Cdc6 (.1) AT2G29680 148 / 5e-39 CDC6, ATCDC6 cell division control 6 (.1.2) AT4G14700 44 / 0.0002 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 44 / 0.0004 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009446 [exp] 213 / 4e-63 AT2G29680 584 / 0.0 cell division control 6 (.1.2) Lus10011627 [exp] 193 / 2e-55 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10028086 [exp] 112 / 6e-28 ND / Lus10031846 [exp] 49 / 1e-05 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031848 [exp] 49 / 1e-05 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 48 / 2e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250200 [exp] 150 / 2e-39 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.009G054300 [exp] 47 / 2e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000427 pacid=23152241 polypeptide=Lus10000427 locus=Lus10000427.g ID=Lus10000427.BGIv1.0 annot-version=v1.0 ATGGGTAGACCGAAGAAGCACATGTCTTTAGGGAAAAACGTATCGCGCGAAAAAGGCGATTCAAGTGCTGCTTCGCGGGACGACAGACCTAGTAGTGATA TAGAGGTAGATCAGCCACCTCAAACAGGTTTGGAGAGAGGTAACAAAATTTTGGCGGAAAATGACGGGTTTTCTTATCTCTATTGGGAAGACTTCATAGA GCAGTACAAACATTTCTTAGTGATGAGGGTAGGAAACACCCAATATTCATTCTCAAGAGACGGCAAGTTGTTATTCCAATTCCTGTTTCGAGCTTTGAAG GATGTTTTTCGGAAAGGGAAAGGTATACCAACATATGGGTTGCTCGAAATGCATGTTATAGTCGTTAAATTCTGCACACCCCCTCCTCCTACTGAGCGTT ACATGATAGCTTCTGTAACTTTGCATCCTGAAAATGGTTATCAGCGGGTCAAAGATGAGTGGTCGAGTGAACTAATTAGTTTGAGCCGTATAATCCAACA CTTGTTTGGTAGTCAAGGGATCATTCAGAATCATTTCGATGCATATTTGAAGCACGTGCTGAAATTAATCAATGATGATGGCGTACTTGGCTTGAGGTGC AGATGGTTAATGGTGTTTAACCATCCTTGTTTTTGGGGACCTAAAAGATCAGCACAATTCATATTGAAGATATATGATTTGTATGAAACAGAATATCCGG CAAACCAGCAAATAATGGTAGACATAGCGGATCTTATTCAGAGTGTTGACATTGCTAATGTTGCTATGAGAGATAACCCGATCAATGATTATATGCACAT CTTCTTTGGTGATCATAGGCCACAAGAGAAGGCTTTCTTTCAAGCCTGTTATAAGGGCTTAGAGGATCATTATTATGATAAGAATGAGCTGGTATGGTTT CAGGGTTTGTCTCGGAGCAGACAATACATGCTATTCATGCGAAATGTTGTGATGCATAGGGAAAGAAGCAAACGCGACCCGAGAACATCACAAGTTTATG AAGTTGGGGGAGTTGTGGTAAAAGAAAGTATAGAGGGTGGTGTTCAGTCTCCAGAAGTATTGTCCATTAACTGTACCACGCTTATGAGCTCTTCTCAGAT TTTGCAGCAAGGAATAGCTAATGCCATAGACTTAGCAGACCGTTTTCTTCCAAAACTCTGGTTATTGAACTGTAAACCCTTGGTTATAACATTCAAAGCT TATTCCAAAGATCAAGTACTCAGGATCCTTCAAGTAGTCTTCAACCCACAAGCTTTGGAGCTATCTGCCAGACTAACTGCATCAGGCGACATGAGGAAAG CGCTTTCTGTTTGTAGTACAGCAGTCAAGATTCTGGAATCTGAACTAAGAGACTCCTGCACTGGTAGCATGAACCCATCTCCTTTACTTGACAAGCAAGA AATCCCAGTTGTGAAGGATGATCACATGGCCACTGCTCTATCAAAAGCATTTGCGTCGCCATTAGTGGACACAATTCAATCACTTGCTGATGTCATATGA
AA sequence Show only first row Show all	>Lus10000427 pacid=23152241 polypeptide=Lus10000427 locus=Lus10000427.g ID=Lus10000427.BGIv1.0 annot-version=v1.0 MGRPKKHMSLGKNVSREKGDSSAASRDDRPSSDIEVDQPPQTGLERGNKILAENDGFSYLYWEDFIEQYKHFLVMRVGNTQYSFSRDGKLLFQFLFRALK DVFRKGKGIPTYGLLEMHVIVVKFCTPPPPTERYMIASVTLHPENGYQRVKDEWSSELISLSRIIQHLFGSQGIIQNHFDAYLKHVLKLINDDGVLGLRC RWLMVFNHPCFWGPKRSAQFILKIYDLYETEYPANQQIMVDIADLIQSVDIANVAMRDNPINDYMHIFFGDHRPQEKAFFQACYKGLEDHYYDKNELVWF QGLSRSRQYMLFMRNVVMHRERSKRDPRTSQVYEVGGVVVKESIEGGVQSPEVLSINCTTLMSSSQILQQGIANAIDLADRFLPKLWLLNCKPLVITFKA YSKDQVLRILQVVFNPQALELSARLTASGDMRKALSVCSTAVKILESELRDSCTGSMNPSPLLDKQEIPVVKDDHMATALSKAFASPLVDTIQSLADVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	0	1
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10000294 [exp]	2.0	0.8502
AT2G48020			Major facilitator superfamily ...		Lus10027973 [exp]	4.6	0.8446
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	8.7	0.8743
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	9.1	0.8583
AT5G59190			subtilase family protein (.1)		Lus10000396 [exp]	13.7	0.8340
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	16.1	0.8577
					Lus10029781 [exp]	19.9	0.7842
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	22.6	0.8310
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	23.0	0.8467
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	25.9	0.8291

Compare expression of checked genes

Lus10000427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.