Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19890 407 / 1e-138 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 159 / 9e-44 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 157 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 156 / 9e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 154 / 4e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63230 146 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 152 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 149 / 7e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 150 / 1e-40 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 148 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006083 [exp] 563 / 0 AT4G19890 844 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 158 / 2e-43 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 154 / 1e-42 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012139 [exp] 154 / 4e-42 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 154 / 5e-42 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 152 / 2e-41 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 150 / 1e-40 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013841 [exp] 150 / 2e-40 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 149 / 3e-40 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121700 [exp] 457 / 4e-158 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 169 / 3e-48 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 166 / 1e-46 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 163 / 6e-46 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 163 / 2e-45 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 163 / 3e-45 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 161 / 5e-45 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 161 / 1e-44 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G034300 [exp] 157 / 2e-44 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 158 / 4e-44 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000428 pacid=23152239 polypeptide=Lus10000428 locus=Lus10000428.g ID=Lus10000428.BGIv1.0 annot-version=v1.0 ATGATTATTGAGATGGGGAACCAAGGATTGGTACTTAGCTCCAGAACTTTGAATTATGTTGTGGAGATTGCTTGTGAGATGGGGATGATTGAGTATGCAG AGGATGTGTTCGACGAAATGCGTATGAGAGATTTTCGTCCTGATTGCACGAGCTATCAGTTGATGGCTATGGCGTATTGTACAGCTGGGAAGGTTTTAGT TTCCGAGAGATGGTTGAGTGACATGGTTGAGAGAGGGTTTCTTGTTGATAACGCTACTTGCAGTTTGGTGATTACAAAGTTTTCTGACGAAGAGTTTGGG AATCGGGCGTACGGGTACTTCAATAAGTGGATTGAGATGGGTCTGAAGCCGAATTTGATCAACTTTACTGCTCTGATTAATGGCCTCTGCAAGAGGGGGA GCATTAAGCAGGCATTCGAGACGTTGGAGGAGATGGTGAAGAAAGGGTGGAAACCGAATGTCTACACTCATGCTGTGTTGATCGATGGACTGTGTAAGAA AGGATGGACCGAGAAGGCGTTTCGGTTGTTCTTGAAGCATGTTAGGAGCGATAATTACAAGCCGAACGTGCATACTTATACCTCCTTGATTCATGGGTAT TGCCGAGAGAATAAGTTGAACAGAGCTGAGATGTTATTTAGCAGAATGAAGGAACAGGGTTTGGTACCCAACACAAGTTCGTATACTTGTCTCGTCAATG GGCATTCTAAAGCTGGGAATTTCGATAGGGCGTTTGAGTTGATGGATGTGATGGGGAAAGAAGGTTTTGCTCCTAATGTGTTTACTTGCAATTCTCTTGT TAATGGATTGTGCAAAAAGCAGAGGTTTTGGGAGGCTTATGAATTGCTCAAGAAGGGCGTCGAAAATGGATTACATTCTAATGTGTGA
AA sequence Show only first row Show all	>Lus10000428 pacid=23152239 polypeptide=Lus10000428 locus=Lus10000428.g ID=Lus10000428.BGIv1.0 annot-version=v1.0 MIIEMGNQGLVLSSRTLNYVVEIACEMGMIEYAEDVFDEMRMRDFRPDCTSYQLMAMAYCTAGKVLVSERWLSDMVERGFLVDNATCSLVITKFSDEEFG NRAYGYFNKWIEMGLKPNLINFTALINGLCKRGSIKQAFETLEEMVKKGWKPNVYTHAVLIDGLCKKGWTEKAFRLFLKHVRSDNYKPNVHTYTSLIHGY CRENKLNRAEMLFSRMKEQGLVPNTSSYTCLVNGHSKAGNFDRAFELMDVMGKEGFAPNVFTCNSLVNGLCKKQRFWEAYELLKKGVENGLHSNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	0	1
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	9.2	0.8449
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	9.9	0.8467
AT4G36980			unknown protein		Lus10009350 [exp]	12.6	0.8217
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	20.8	0.8364
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	29.1	0.7719
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	29.8	0.8110
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	31.8	0.7875
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	33.1	0.8152
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10025564 [exp]	35.2	0.7720
					Lus10032858 [exp]	38.5	0.8058

Compare expression of checked genes

Lus10000428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.