Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009444 [exp] 89 / 1e-20 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000429 pacid=23152238 polypeptide=Lus10000429 locus=Lus10000429.g ID=Lus10000429.BGIv1.0 annot-version=v1.0 ATGCTGCAAAGTGGTGTCGTTCCCGAGTCTCCTATCAGTGATCAACATGGTTTTGTTCCCGACTCTCCTATGGATGATGAACATGGTATCGTTCCCGAGT CTCCTTTGAACAATGAACATGTAGATAATGGCTTGTCAGTTCTTCTGATAAGTCAGACAGTGTTCAACCAGTACGAAGGCTCAAAAGGCTTCGAAAAGTT GGAGAACTTGCGAAGGGTAAGAACTCAGGAAGCACTAGAGACGACCGTTCTTTTTGCTATGAAACAAATGTTAATGGATCTGCATAGAGAGATACTGATT AGCAGTGCCATTTTCAGGCAAAAGGGAGCAGCTTGGCATCATCAACGACTTCAAATAGAAGAGGAAGCCGAGCGTTCTTTGCTCAGTCAATCACCAATGC CGAGGGATCCTGTTGGCCTCTCCCGCCGTCTCCGATCTCCAATGACGCAGCTACAGATCCCGTTGACCTCTGCCTGCCGACGGCCTCCGTCGAAGACTAG CAGAAGGATGAAATCTTGCTCCTTCTATAGGTAA
AA sequence Show only first row Show all	>Lus10000429 pacid=23152238 polypeptide=Lus10000429 locus=Lus10000429.g ID=Lus10000429.BGIv1.0 annot-version=v1.0 MLQSGVVPESPISDQHGFVPDSPMDDEHGIVPESPLNNEHVDNGLSVLLISQTVFNQYEGSKGFEKLENLRRVRTQEALETTVLFAMKQMLMDLHREILI SSAIFRQKGAAWHHQRLQIEEEAERSLLSQSPMPRDPVGLSRRLRSPMTQLQIPLTSACRRPPSKTSRRMKSCSFYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000429 [exp]	0	1
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	2.2	0.8205
AT5G22120			unknown protein		Lus10004788 [exp]	13.4	0.7232
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	13.7	0.8064
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	14.4	0.7304
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	17.7	0.7844
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	20.8	0.7402
AT5G04050			RNA-directed DNA polymerase (r...		Lus10027263 [exp]	21.9	0.7143
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	23.0	0.7133
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	25.8	0.7630
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	30.6	0.7546

Compare expression of checked genes

Lus10000429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.