Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62300 84 / 2e-17 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G11420 75 / 2e-14 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G03300 68 / 4e-12 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G26540 66 / 2e-11 Agenet domain-containing protein (.1) AT3G06520 58 / 4e-09 agenet domain-containing protein (.1) AT1G35530 52 / 4e-07 DEAD/DEAH box RNA helicase family protein (.1.2) AT1G09320 50 / 1e-06 agenet domain-containing protein (.1) AT1G06340 46 / 5e-06 Plant Tudor-like protein (.1) AT5G23780 47 / 1e-05 ATDUF9 DOMAIN OF UNKNOWN FUNCTION 724 9 (.1) AT2G47230 47 / 2e-05 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010060 [exp] 375 / 2e-122 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 343 / 8e-110 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10002437 [exp] 334 / 2e-108 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10037805 [exp] 67 / 9e-12 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 63 / 1e-10 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10009444 [exp] 61 / 1e-09 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10000353 [exp] 55 / 8e-08 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 54 / 9e-08 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10010903 [exp] 48 / 7e-06 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117800 [exp] 114 / 2e-27 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.002G192300 [exp] 114 / 3e-27 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.013G109600 [exp] 63 / 2e-10 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G110200 [exp] 61 / 4e-10 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.005G011100 [exp] 57 / 8e-09 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 55 / 4e-08 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000430 pacid=23152237 polypeptide=Lus10000430 locus=Lus10000430.g ID=Lus10000430.BGIv1.0 annot-version=v1.0 ATGACGGTTGAGGAGAAGCATCTAAGGTTTCACTCGGACTGGGTTAATGGAGAATGGATTCAACCTAAAAACAGACACCGGATCCTTCCGGATACTTGGG TTCCGGGACTTTTCATAAAAAAGAGTGCGGAAAAGGATGAGGGTGGGGGTGAGTATCGATTATGTTTCCTTGTCAAGTGTCCAGGGTTGGGCAGTTTGGA TAATGCAATAAATGTAAACGCAACAAAGGAAAACGTTGTGATTGTAGATTTGCAACATATACGGCCCTCACCTCAATGCCAATCCCGTACAGACTATGAA TTGCAGGATCATGTAGATGGTTGGATTGCTGAAAGCTGGCAGAAGGGACTGATTACTAAAGTTACTAAGGGAAAGTACACAGTCTCCCTTCAGCAGCGGA AGGAAGACAAGGAGTTTAGCTTCAAAGAACTTCGGCCTCATTTGGACTGGGTTGATGGAGAATGGAAAGAAAAGTCAAAAGTTCAATCCAAGGGACTTGT CAACACTGAAAGGCGAAGGCGTGGTGATAATATTTCTGCTGCAAAACTTCAACTGACTGTAGTTCGTGTTATCAGCAAGAAAACGCCTTGCTCCTCAACC ACAAGAACCAACATGGACCATTCCACTATCTCTGCTGAAAAGTCTGCTTCGGATGTCTTTCCCTCAAGCAATAAGAAGGTGAAAGTAAATTCCGACATGG CCGGTAAGAAGGTAACCCATTGTGACACCTTAATGATAGAAGGAGATGCCGGAGAGGCCCCTTTATCTGTCAAAAGGATAAAGGAAAGTTCAACTCAAAG GGGAACTTCTTCAAAGCTACAAAAGGAAAGGTTAACAAAGGCCAAAAGTTCTCAGGATTGCAACCAGCTTTCTGAAAACACTAAGAAGAGACAAGCAAAT CCAGTCAAACTTGGCAGGAATGGCGAGGGTGCAATTGGAACGAGTCACTCTTCCAAATCTAGTCCTATTCTAGAAGGTGACAAACTGAATCCCTTGGCAG ATAAAAAACGGGGAAGCAATTCATCTGGAGAACGGACCTTGGAGTGGACAATTGATATGGTAGGCCAGATAGGTCCAACAAAACTAGCATGCTTTTGGAA ATCTAAACGGGTTTTCTTTGATACACCCCAGGTTTATGAACCAAAATCAGATGCGTAG
AA sequence Show only first row Show all	>Lus10000430 pacid=23152237 polypeptide=Lus10000430 locus=Lus10000430.g ID=Lus10000430.BGIv1.0 annot-version=v1.0 MTVEEKHLRFHSDWVNGEWIQPKNRHRILPDTWVPGLFIKKSAEKDEGGGEYRLCFLVKCPGLGSLDNAINVNATKENVVIVDLQHIRPSPQCQSRTDYE LQDHVDGWIAESWQKGLITKVTKGKYTVSLQQRKEDKEFSFKELRPHLDWVDGEWKEKSKVQSKGLVNTERRRRGDNISAAKLQLTVVRVISKKTPCSST TRTNMDHSTISAEKSASDVFPSSNKKVKVNSDMAGKKVTHCDTLMIEGDAGEAPLSVKRIKESSTQRGTSSKLQKERLTKAKSSQDCNQLSENTKKRQAN PVKLGRNGEGAIGTSHSSKSSPILEGDKLNPLADKKRGSNSSGERTLEWTIDMVGQIGPTKLACFWKSKRVFFDTPQVYEPKSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10000430 [exp]	0	1
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	3.7	0.9353
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10017408 [exp]	4.1	0.9134
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	6.2	0.9348
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	7.9	0.9402
					Lus10013097 [exp]	8.2	0.9044
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	10.0	0.8766
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10041277 [exp]	10.8	0.8937
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036908 [exp]	13.7	0.9057
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	14.3	0.8969
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	14.4	0.9173

Compare expression of checked genes

Lus10000430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.