Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 222 / 2e-66 ARA12 Subtilase family protein (.1) AT1G04110 222 / 2e-66 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14240 218 / 6e-65 Subtilase family protein (.1) AT2G05920 214 / 2e-63 Subtilase family protein (.1) AT3G14067 208 / 3e-61 Subtilase family protein (.1) AT4G34980 199 / 3e-58 SLP2 subtilisin-like serine protease 2 (.1) AT5G59810 196 / 7e-57 ATSBT5.4 Subtilase family protein (.1) AT5G51750 194 / 7e-56 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 193 / 8e-56 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT1G01900 184 / 1e-52 SBTI1.1, ATSBT1.1 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029570 [exp] 471 / 1e-162 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 469 / 6e-162 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006303 [exp] 444 / 4e-152 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 445 / 4e-149 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 431 / 2e-143 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10002242 [exp] 391 / 2e-131 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 390 / 6e-131 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10006310 [exp] 390 / 7e-131 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 375 / 5e-125 AT5G67360 536 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118500 [exp] 315 / 1e-101 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 310 / 7e-100 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 305 / 4e-98 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 304 / 2e-97 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 300 / 5e-96 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G256300 [exp] 232 / 3e-70 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 227 / 7e-69 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 224 / 4e-67 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.014G171600 [exp] 223 / 5e-67 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.003G067000 [exp] 212 / 1e-62 AT3G14067 969 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10000433 pacid=23161046 polypeptide=Lus10000433 locus=Lus10000433.g ID=Lus10000433.BGIv1.0 annot-version=v1.0 ATGAGCAATTTCATGGTCAATCCCTCTTCCACCCTAACGACTTCCATCGACGAATTCCCATTTGTCGATGCAAGCACGAGTAGCAATGCGGCAGCAATAT TTTGTGATGAAGGATCACTAAAAAACATTGATGCTGCAGGCAAGATTGTTCTATGCCAGATTGGAGGTAATACTGGACCAGTCGACAAAGGGATGGTCGT AATCAATAGTTTGGCCGGAGGGTTTTTACCTACACCTGCACCCCATGTCCTTCCTGCATCACACATTAATTACAATGACGGATTGGTAATCAAAACTTAC TTGAATTCCACGTCATATCCTACTGCTAAAATCTCATTCCAAGGTACCAAGATTGGGGATTTGAGTGCACCACGAATAGCTTTGTTCTCGTCTAGAGGTC AAAACATACGAACTCCGGAGATCCTGCAACCTGACATCATTGGTCCTGGGGTGAGCATTCTAGCTGCTTGGGGAGAGTCAGTTGACAATAAAACCGATTC ATTCAATATAATCTCGGGAACTTCAATGTGTTGCCCACATCTCAGCGGCGTTGCAGCTGTAATCAAGGCAGTGCATCCAAATTGGTCTTCTGCTGCCATA AAGTCTCCCATTTTAACCACTGCTTACACAGTTGACCGAAGTGGCAAGCCGATCTCCAATGAGCAAAATTCCCCTGCTATTGTCTTTGATATGGGTGTCG GTCATGTGAACCCACCAAAAGCTTTCAGTCATGGCTTCGTATATGACATTCAACCAGATGATTATGTTGGTTATCTATGTGGTTTGGGTTACAATGACAC ACAGGTAAGCATGATTGTGCAGCGAAAAGTGAAAAGCTCGAATGGATCTGCCATACCCGGGGCTCAGCTGAACTACCCTACATTTTCTATCTCGTTAAGT TCTACAGCAGCAAGGTATTTGCACCGGATAGTGTGGATGTTAAAGTTGAACCAAGTGAGTTTAAGTTGA
AA sequence Show only first row Show all	>Lus10000433 pacid=23161046 polypeptide=Lus10000433 locus=Lus10000433.g ID=Lus10000433.BGIv1.0 annot-version=v1.0 MSNFMVNPSSTLTTSIDEFPFVDASTSSNAAAIFCDEGSLKNIDAAGKIVLCQIGGNTGPVDKGMVVINSLAGGFLPTPAPHVLPASHINYNDGLVIKTY LNSTSYPTAKISFQGTKIGDLSAPRIALFSSRGQNIRTPEILQPDIIGPGVSILAAWGESVDNKTDSFNIISGTSMCCPHLSGVAAVIKAVHPNWSSAAI KSPILTTAYTVDRSGKPISNEQNSPAIVFDMGVGHVNPPKAFSHGFVYDIQPDDYVGYLCGLGYNDTQVSMIVQRKVKSSNGSAIPGAQLNYPTFSISLS STAARYLHRIVWMLKLNQVSLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10000433 [exp]	0	1
AT3G22250			UDP-Glycosyltransferase superf...		Lus10035452 [exp]	4.0	0.7917
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029047 [exp]	14.1	0.6853
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021795 [exp]	24.8	0.6756
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	34.2	0.7215
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	50.3	0.7012
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	54.3	0.6165
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Lus10022314 [exp]	56.3	0.6154
AT2G33580			Protein kinase superfamily pro...		Lus10036731 [exp]	57.9	0.5992
AT2G40435			unknown protein		Lus10010217 [exp]	68.6	0.6802
					Lus10038619 [exp]	78.1	0.6612

Compare expression of checked genes

Lus10000433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.