Plant FIBer expression Database

Lus10000435 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37020 169 / 5e-54 unknown protein
AT1G51380 45 / 6e-06 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017407
[exp]
55 / 3e-09 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1)
Lus10040975
[exp]
55 / 3e-09 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G043200
[exp]
172 / 4e-55 AT4G37020 192 / 6e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10000435 pacid=23152167 polypeptide=Lus10000435 locus=Lus10000435.g ID=Lus10000435.BGIv1.0 annot-version=v1.0
ATGGAGATGCTGGTTGATTTGCTTGGGCTGGCCGCCCGCCACTCTCGGCTGCCAATGGTGGTCTGCTGCAGCTCTCGGGATCAGCTCGATGCTTACAGCG
ACCTGGGTGAATCAGAAAGAATCCTTGTTCTTGAGACATTTAGGCAAGCAGTTATGAACTGGAACGAAAGTTCAATTGTTCAGTCAGGGGATGATGGTGA
AGATAATATGAAATCTGAGATGATAGTTGTAACAGATGCTTGCCTTCCGGGTGTTGTTAGCGGGGAGTCTTCTTGCATAGCTTCTCGTGTCCTTATCAAC
TACGAGATACCAGCGAAGAAGGAAACTTATATGAGACGCATGAGCACCTGTCTCGCACCAGATGGGATTGTAATCAATGTGGTGGCTGGGGGTGAAGTTG
TAACCTTGAAGAATGTTGAAGAAAGTTGTGGCTTTCTCATTGCTGAAATGCCGATAAATGTAAGCTTTCCGACATGA
AA sequence
>Lus10000435 pacid=23152167 polypeptide=Lus10000435 locus=Lus10000435.g ID=Lus10000435.BGIv1.0 annot-version=v1.0
MEMLVDLLGLAARHSRLPMVVCCSSRDQLDAYSDLGESERILVLETFRQAVMNWNESSIVQSGDDGEDNMKSEMIVVTDACLPGVVSGESSCIASRVLIN
YEIPAKKETYMRRMSTCLAPDGIVINVVAGGEVVTLKNVEESCGFLIAEMPINVSFPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37020 unknown protein Lus10000435
[exp]
0 1
AT3G05400 Major facilitator superfamily ... Lus10029970
[exp]
2.8 0.8640
AT2G27790 RNA-binding (RRM/RBD/RNP motif... Lus10030600
[exp]
3.0 0.8942
AT5G13700 ATPAO1, APAO polyamine oxidase 1 (.1) Lus10041898
[exp]
3.5 0.8683
AT5G65880 unknown protein Lus10039652
[exp]
3.5 0.8817
AT5G60335 Thioesterase superfamily prote... Lus10028483
[exp]
3.7 0.8678
AT5G18100 CSD3 copper/zinc superoxide dismuta... Lus10010651
[exp]
3.9 0.8897
AT5G57910 unknown protein Lus10036255
[exp]
5.2 0.8611
AT1G07745 SSN1, ATRAD51D,... SUPPRESOR OF SNI1, homolog of ... Lus10005437
[exp]
5.3 0.8903
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Lus10019468
[exp]
6.5 0.8400
AT1G16670 Protein kinase superfamily pro... Lus10028149
[exp]
7.4 0.8783

Lus10000435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.