Plant FIBer expression Database

Lus10000437 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41460 541 / 0 ARP apurinic endonuclease-redox protein (.1.2)
AT3G48425 106 / 4e-25 DNAse I-like superfamily protein (.1)
AT4G36050 82 / 2e-16 endonuclease/exonuclease/phosphatase family protein (.1.2)
AT3G61030 67 / 1e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
AT3G60950 0 / 1 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019483
[exp]
100 / 8e-23 AT3G48425 556 / 0.0 DNAse I-like superfamily protein (.1)
Lus10043333
[exp]
100 / 1e-22 AT3G48425 549 / 0.0 DNAse I-like superfamily protein (.1)
Lus10028455
[exp]
83 / 1e-16 AT4G36050 650 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2)
Lus10041907
[exp]
63 / 3e-10 AT4G36050 410 / 6e-135 endonuclease/exonuclease/phosphatase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G042000
[exp]
606 / 0 AT2G41460 590 / 0.0 apurinic endonuclease-redox protein (.1.2)
Potri.015G088900
[exp]
111 / 7e-27 AT3G48425 557 / 0.0 DNAse I-like superfamily protein (.1)
Potri.007G057400
[exp]
89 / 1e-18 AT4G36050 622 / 0.0 endonuclease/exonuclease/phosphatase family protein (.1.2)
Potri.006G045601
[exp]
0 / 1 AT2G41460 0 / 1 apurinic endonuclease-redox protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Lus10000437 pacid=23143909 polypeptide=Lus10000437 locus=Lus10000437.g ID=Lus10000437.BGIv1.0 annot-version=v1.0
ATGAGTCCCAAACGTCTCTCTTCTGCTACGGGGAAGCCTACTCACCTAGTCACCAAGGATGAGAAAAGCAAGAAACCAAAAGTTTCAAGAGGATCAAGTG
AAAGTTCAGAGGATGATAATGATGCGGAGAAAGAGAAGACTGTTGGAACCCAAAATGTCCATCAACATCTAGCTAACATTGAGTCAATGACTGGTCAAGA
ACTTAGAACAAATTTGAGGAGCATCGGAGCTTCCGTGAAGGGCCGGAAACAAGATCCTGTATATGCTTTGACAGAATCCATTAAAAAGGAGAAAAGTGAT
GCAGGTGAAAGCTTTGTTTGTGGAGCAGATACTTCAAGACAGAATAATACGAAGAATCCTGTTGATGAGAGCGATGCACCAACTATAAGCACCATGTCAG
AGGTTTCTGTCATCAATAGGAGTAGGGGAACTGTAAAACGGTCCACATCTAGCAATATAACAAGGACAGTTAAGGCTCAAACTGTTGCTACGGAGAAAAA
GTTATCAATCACAACTGAGAAGGTGTCAGAGATCTCCCCAGTAGCTGAACCTTGGACAGTCCTTGCACATAAAAAGCCTCATAAAGTATGGATTCCGTAC
AATCCCAAGACATTAAGGCCTCCACTCCTCGATAGAGATTCTTTGTCTATGAAGATAATGTCGTGGAATGTTAATGGTCTTCGAGCATTACTAAAGTTGG
AGGGATTTTCTGCTCTTGAGCTTGCCAAGAGAGAAGACTTTGATGTCTTGTGCTTGCAAGAGACCAAGCTGCAGGGATTACAGGACAAAGACGTAGAATC
TATCAAGCGATGTCTCTTAGAAGGGTACGAAAGTAGCTTCTGGACATGTAGCCATGCAAAGCTGGGTTATTCTGGCACAGCAATAATCTCACGGGTAAAA
CCACTTTCAGTTACCTACGGTTTGGGCATAGAAGATCATGACAGGGAAGGACGAATAGTGACCGCCGAGTTTGATAAATTTTATCTAATATGTGCTTATG
TACCCAACTCTGGTGATGGCTTGAAGAGATTGTCATACAGGATTATGCAGTGGGATCCGTGTCTTAGCAACTACATGAAAGAGCTGGAGAAGTCTAAACC
TGTCATTTTAACCGGTGATTTGAATTGTGCTCATGAGGAAATTGACATCTTCAATCCAGCTGGGAACAAAAGGAGTGCTGGGTTCACTGACGAAGAAAGG
AAGTCATTTGGTACAAACTTGTTGGACAAGGGATTTGTGGATACATTCAGAAGGCAGCATCCGAATACTGTTGGCTACACTTACTGGGGTTATAGGCATG
GTGGTAGGAAGACTAACAAAGGCTGGCGGCTGGACTACTTCCTCGTCTCGGAATCCCTAGCTGACAAGGTCTACGACTCTTATATTGTCCCCGATGTCAC
TGGCAGCGATCACTGTCCAATCGGCCTTATACTCCGCCTGTAG
AA sequence
>Lus10000437 pacid=23143909 polypeptide=Lus10000437 locus=Lus10000437.g ID=Lus10000437.BGIv1.0 annot-version=v1.0
MSPKRLSSATGKPTHLVTKDEKSKKPKVSRGSSESSEDDNDAEKEKTVGTQNVHQHLANIESMTGQELRTNLRSIGASVKGRKQDPVYALTESIKKEKSD
AGESFVCGADTSRQNNTKNPVDESDAPTISTMSEVSVINRSRGTVKRSTSSNITRTVKAQTVATEKKLSITTEKVSEISPVAEPWTVLAHKKPHKVWIPY
NPKTLRPPLLDRDSLSMKIMSWNVNGLRALLKLEGFSALELAKREDFDVLCLQETKLQGLQDKDVESIKRCLLEGYESSFWTCSHAKLGYSGTAIISRVK
PLSVTYGLGIEDHDREGRIVTAEFDKFYLICAYVPNSGDGLKRLSYRIMQWDPCLSNYMKELEKSKPVILTGDLNCAHEEIDIFNPAGNKRSAGFTDEER
KSFGTNLLDKGFVDTFRRQHPNTVGYTYWGYRHGGRKTNKGWRLDYFLVSESLADKVYDSYIVPDVTGSDHCPIGLILRL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41460 ARP apurinic endonuclease-redox pr... Lus10000437
[exp]
0 1
AT2G32810 BGAL9 beta-galactosidase 9, beta gal... Lus10014278
[exp]
5.4 0.9051
AT4G31890 ARM repeat superfamily protein... Lus10041017
[exp]
11.0 0.8828
AT5G64420 DNA polymerase V family (.1) Lus10041274
[exp]
12.4 0.9032
AT1G51965 ABO5 ABA Overly-Sensitive 5 (.1) Lus10006850
[exp]
12.5 0.8609
AT4G18820 AAA-type ATPase family protein... Lus10005422
[exp]
15.0 0.8960
AT3G15550 unknown protein Lus10025758
[exp]
19.7 0.8984
AT4G36360 BGAL3 beta-galactosidase 3 (.1.2) Lus10025980
[exp]
20.4 0.8833
AT5G04420 Galactose oxidase/kelch repeat... Lus10017457
[exp]
20.9 0.8542
AT5G09840 Putative endonuclease or glyco... Lus10020866
[exp]
23.5 0.8919
AT3G21620 ERD (early-responsive to dehyd... Lus10035300
[exp]
24.3 0.8953

Lus10000437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.