Plant FIBer expression Database

Lus10000439 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16520 607 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G087400
[exp]
667 / 0 AT5G16520 720 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10000439 pacid=23143908 polypeptide=Lus10000439 locus=Lus10000439.g ID=Lus10000439.BGIv1.0 annot-version=v1.0
ATGGCACAATGCCCTCCGAATTCAATCACCTACAACCAAACCCTCTGCGCCTGCCTCCCCGGTTACCTCCTCACCCGCCGGAGCTGCTCCTTTTTCAACG
CCAGCTCAGATATTCACGCGGTTTCGGGCGTCGATTTCAATACGCTCTCTTTCCCAGCCACCATCTTCGACTTTGATTCAATCCGCAAATTCACCCAGTC
CCAAGCTGTATTCTTGGAGGCTACTCTTGTTATGCTGCTTTCCTGGCTTCTCTTTTGCTTGTTGCTGAGGTTTCTCAAGCTCGGTGATGGCAATAATGTT
TGGTTCAACATCAGGTGGTGGATCAGTCGCTTGGATATTTGCTTTTCCACAAGACACTGGCTTGATGATCAAAAAGTGGTAGTAAAGAGGAAAACTGAAC
TTGGGGGAACTTTCTCTATAGCAAGTTGGATTCTCTTCATTGGTTTATTTGCTGCGTTGCTTTACCAAATTATATCCAAGAGGAGTATTGAGGTGCATAA
TGTGAGAGCAATGAGTGCAACTGATTTGGCTTCATTTCTCAATGACATGGAGTTCAATATTACTACTGTCTCGAGTATGAGTTGTTCTAACTTACGTGGC
CTTGGGAACTTGGTTGCTGGACAGTCTGGGTTTGGAAACCAGAGAGTTGTGCCTCTTGCGAATTTTGCAAACTACTCCTGCCAGAATACAACTAGAGGGC
CTACCATATCTTTCAGTTGTACTAACTGCCAGATCATCTCGGATTCTCTCTTCATCTCATGGCAGTTCATTGATATTCCAGGCAGTCCAGCAGCTGCTGT
AGCATTCCAGTTTAACCTTTCTGCTAATTATCATGGTGATAAGAAACATGTGAGTGCGGTTGGTGGCACAGTCAAGAATGGAAACTTGATTTTAAATAGT
CAGCCTTTTACACTCAGAGGGACGGATCCTAACATAATCAAATTCAGTCTATTTCCTCGTATTTACCATAATCTACATGATCTGAAACTCATTCAACCTC
TATATCATGACTTCCTTCCTGGTTCCTTTTACACTGACCCGAGTCAGCTCCGTGCTTCCCTTCAAACTTCTGCCGATGGTTTGATTAACACAACATTGTA
CATCAATTACCTCTCTTCCTACGTTGTTGAGATTGAAAATCAGAACATAATGGGTCCTGTGAGCTTCCTTGCTGATCTTGGTGGTCTATATTGCATCAGC
ATTGGCATATTTTTCTACCTCTTGGTGCAGTGTGAATACAGAATAAAGAAGTTACGAAGTGAGGACAGAACCATGAAGGACATCAGGAAAAGACTAAAAG
CTCAGGCACGGTGGGAAAAATTAAGAAAATATGTGATGTACACATGGGGGTGCAGCACCCTGGACGACGACTTGAGAAGCAACAATAATGAAACGAGTTG
CAATTTCCTGCTCCCATCTGTTCGTAACAAGGATGGATCATCACGGAAGAGGTCAAAGAGGATGGATTCTATTCATTTCAATCAGAAAGTTGGTTCAACC
ACTGAAAAGGAGGATGAAATGCCCCTCTCGAAAACTAAACCAGATGATGATGTCATTCCTCCCCTACCTCCGTTAGGTAAAACATAG
AA sequence
>Lus10000439 pacid=23143908 polypeptide=Lus10000439 locus=Lus10000439.g ID=Lus10000439.BGIv1.0 annot-version=v1.0
MAQCPPNSITYNQTLCACLPGYLLTRRSCSFFNASSDIHAVSGVDFNTLSFPATIFDFDSIRKFTQSQAVFLEATLVMLLSWLLFCLLLRFLKLGDGNNV
WFNIRWWISRLDICFSTRHWLDDQKVVVKRKTELGGTFSIASWILFIGLFAALLYQIISKRSIEVHNVRAMSATDLASFLNDMEFNITTVSSMSCSNLRG
LGNLVAGQSGFGNQRVVPLANFANYSCQNTTRGPTISFSCTNCQIISDSLFISWQFIDIPGSPAAAVAFQFNLSANYHGDKKHVSAVGGTVKNGNLILNS
QPFTLRGTDPNIIKFSLFPRIYHNLHDLKLIQPLYHDFLPGSFYTDPSQLRASLQTSADGLINTTLYINYLSSYVVEIENQNIMGPVSFLADLGGLYCIS
IGIFFYLLVQCEYRIKKLRSEDRTMKDIRKRLKAQARWEKLRKYVMYTWGCSTLDDDLRSNNNETSCNFLLPSVRNKDGSSRKRSKRMDSIHFNQKVGST
TEKEDEMPLSKTKPDDDVIPPLPPLGKT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16520 unknown protein Lus10000439
[exp]
0 1
AT1G59820 ALA3 aminophospholipid ATPase 3 (.1... Lus10013286
[exp]
3.3 0.7855
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Lus10002377
[exp]
17.9 0.6680
AT2G43160 ENTH/VHS family protein (.1.2.... Lus10019571
[exp]
20.2 0.7375
AT4G33210 SLOMO SLOW MOTION, F-box family prot... Lus10038067
[exp]
21.4 0.7460
AT2G27900 unknown protein Lus10000865
[exp]
26.2 0.7392
AT3G16785 PLDZ1, PLDZETA1... PHOSPHOLIPASE D ZETA1, PHOSPHO... Lus10037708
[exp]
27.0 0.7426
AT3G16785 PLDZ1, PLDZETA1... PHOSPHOLIPASE D ZETA1, PHOSPHO... Lus10016830
[exp]
41.9 0.7038
AT1G59820 ALA3 aminophospholipid ATPase 3 (.1... Lus10030809
[exp]
44.4 0.6813
AT4G35830 ACO1 aconitase 1 (.1.2) Lus10041858
[exp]
46.5 0.6916
AT5G56890 Protein kinase superfamily pro... Lus10027635
[exp]
51.3 0.6975

Lus10000439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.