Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70620 129 / 3e-30 cyclin-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026699 [exp] 1059 / 0 AT1G70620 213 / 4e-57 cyclin-related (.1.2.3) Lus10006211 [exp] 69 / 4e-13 AT1G06980 39 / 9e-04 unknown protein Lus10036859 [exp] 69 / 8e-13 AT1G06980 41 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046000 [exp] 294 / 7e-85 AT1G70620 187 / 2e-48 cyclin-related (.1.2.3) Potri.008G186900 [exp] 286 / 5e-82 AT1G70620 189 / 2e-49 cyclin-related (.1.2.3) Potri.008G186700 [exp] 66 / 9e-12 AT5G50090 41 / 1e-04 unknown protein Potri.010G046225 [exp] 57 / 5e-09 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000440 pacid=23156104 polypeptide=Lus10000440 locus=Lus10000440.g ID=Lus10000440.BGIv1.0 annot-version=v1.0 ATGGACGCTTACCAGCATCGGCCACCACCGCCGTTCATGCGGCCTCCACCGCCACTGCCTCCGTCTTCCGATCCTAACCAGTTCCACCACCACCACCACC ACCCTCCTCCGCCGCCGCAGCAGCAGCATCTCCATCCTCAGCAGGCCCCTTGGTATCCCAACCAATACCAATTCCATCAATCCCCTTCCCCTCCCCCTCC TCATCAATGGGCTCCTCCTCCTCCGCCGCAGCAGCACCCGCCTTCTTCTTCCTACCCTCTCCCGCCGCCGCATCAGTATCCTCTTCCTCCGCCTCCCCAC TCATCATATCTGCCGGTAAATCAGGAATGGGGTAATCCGAACTTCGTACATCACCAGGGTTACCAAGTTATGCCACCGGCACACAACAATGCGGAGGATT GGGCTGCTAGAGCCAAAGCATGGGCAACTGCGAAGAATGTTCCTGACGAACATCAACCCCCTCAACCTCCGCCACAGCAGCCTCAGTATCCACATAATTT TGATCCTCGTTATCAAGATGTTCAGCAGCAGCAACAAGTGTATCCTACGTCGGGATATCCAGCTCCTCCTGTGTATCAGCAGCCACCATTAGGTTATTCG CAGGGTCCTACTGCGGCTTACAACTCGGTGCAGCAGCAATCTTCTTATGCTGCTCCAGATGGTCAGGTGCTTCACACAACTTCTTCGGCTGGAGTTCCAA CTGCAAGTCCGTCTGTTCATGAGCAGGAGGTACCTTCTAGTTATTCCTCTTTTACAGGTAGAGGAGACACGGCAGAGCCAAAGGAGCATCTGCATCAGCC TTTGCCTGTTTCATCAGCACAAGAAATGCAGCATATTGGTCCGTCAAATCCGACACAACCTCCTTTTGCATATGGCAATCCGGGCCTTGATCCGATAACC AACCTTAGCGACCAACCTCTACAATTCGCCCCTAGTTTTAGCCGCGATCATGATTCACATATGCCACCAAATTATCCCGGTGTTACTGATTCCTGGACTC ATTCTGCTGCTGCTAGCTCTGTTTATCCTCCGGCTGCCCCACCGGGTCCACAGTATGATACTTCGATGGCTATGCCTCCTGTTTCTGGACACGGTGCACC ACCATTTGGAAGCTTTCCTGGCACAACTTTTCAGTCAACGTTACCATCCAACGGTTCACAATTCGGTATTGTGGTTGGGGATGTACTCCATCCTTCCTTG GGTTATGCAGGTGATGGGTATGGAGTTGCTAACATTTCGGACCGTCCTAAAAAGGCTTCTGTGCCTAACTGGCTTAAAGAGGAAATCATAAAAAATGCAA CAGTCATCACAAGGTCGTCTTTGGAGAATCCAAAAGAGGTCGATGATGAAGAAATCGATACATCCTTTCGTAGCGGTGAGAAAGGGGATAACAACAAAAG CGTTGATTCGTCTAGGTCAACTGAAGAAGAAGAAGAAGATGACGATGAGGATGAAGCAGAAGCTGCTCACACTGCTGCAGTAAACCTTGAAATAAAACGT ATTCTGACGGAGGTTTTGTCAAAGGTCACCAATGAGCTGTTTGATGAGATAGCAACGAAAATCTTAGATGAAGATAATCAGATGGTGGAAGGTAATTTGA CGGCCTCTACACAGAAAGCTTCTGCAGAAGTCGTAGTCCGAGCTAAAGCCGAGGAACCTGCTGCAGAAGAAAGTGAAAAGTCCAGTTCCAGCGCTCCTGC TGGAAATTTATTAGGTCTCGTGAATTATGCCTCCGACCAAGATGATGATGATGAGATTAGGAGTGTAGAAGGCGGCAAATTAAAGGCCGGTGGCCAAATT TTTGGCCCGAAAGGCACCCCACAAAGGAATATGACGAGTTCTGAATTTAACGGGGATGGTGAAACGGCAAATAAAGATGACAAGAAAAGCTCGTTGAGTA AAGATGTAACTAAGGGAGCAGATGAGAATGAAAGGAGGCAAGATACAAGGCACTCGAGAACCGAAAGGTCTGAACACCATAATGGCTTGAAACTGAGAAC GAAAGATCGAGCTGATGGGATTGGAGAAAGAGGAAAGGAATCGGTGTCGAAAAAGAGATCCTCGCATTCTGATGTCAAGGAAGCTAAGGAGTCTGAGAAA GTGACTAAGGGGAGTTCCAAAGATGATTCGAGCAGAAAAAGAGAAAGAGCAAAGGAGAAGAAGGAAGACCGAGGGAGGCTTAAATCTGCGAATGAATCAT CAAGGGGCAAGAGAAGGCACTCATCATCTGATGATGACTCGAGCAATGAAGAATCAGATGATTCCAAAAGGAAGCGACATTCGAGAAGGCAACTCTCACC ATCACCTGTTAGGTCAAGAAGGAGACAAGTTTCGCGGTCACCTCATAACAAGCATTCTCAGCGCAGGCATTCTCCCTACTCTTCTATTGAGACCAGCAGC TCCTGCTGCTGCTTGATGGAACCCAGGAAGATCTCCAGGAGAAGAAACCAGGAGATAACAAAGCAAGAACCTGACAAAAATCCTGTCAGGATTGTTCAAG AAGAAACCTCCGATCCTGACGCGAACATAACTTGGGACCACGAACCTGAGGAGGAGCCTGCAGCAGTCTGCTCTGCTAAAGAATTCTACGCTTCTTCTTC TTCGCAAAGGAAGAAAGTGAGGCCATCTAGCTCGAGAGAGCAGGAGAGGTCGAGAGGTTTCGACAATAAGGGGTTCGAGAGGAGGAGCTTCAGGTTTAAC CGGCAGCCATTTGTGCCTCCCTTGCCGAGATCGAGGAGCTTCAGAGGGCTGGAGTGGGAGCCTAGCCTTAGTTCTGTTCAGGAGCTTTCTCAGGAGATCT AA
AA sequence Show only first row Show all	>Lus10000440 pacid=23156104 polypeptide=Lus10000440 locus=Lus10000440.g ID=Lus10000440.BGIv1.0 annot-version=v1.0 MDAYQHRPPPPFMRPPPPLPPSSDPNQFHHHHHHPPPPPQQQHLHPQQAPWYPNQYQFHQSPSPPPPHQWAPPPPPQQHPPSSSYPLPPPHQYPLPPPPH SSYLPVNQEWGNPNFVHHQGYQVMPPAHNNAEDWAARAKAWATAKNVPDEHQPPQPPPQQPQYPHNFDPRYQDVQQQQQVYPTSGYPAPPVYQQPPLGYS QGPTAAYNSVQQQSSYAAPDGQVLHTTSSAGVPTASPSVHEQEVPSSYSSFTGRGDTAEPKEHLHQPLPVSSAQEMQHIGPSNPTQPPFAYGNPGLDPIT NLSDQPLQFAPSFSRDHDSHMPPNYPGVTDSWTHSAAASSVYPPAAPPGPQYDTSMAMPPVSGHGAPPFGSFPGTTFQSTLPSNGSQFGIVVGDVLHPSL GYAGDGYGVANISDRPKKASVPNWLKEEIIKNATVITRSSLENPKEVDDEEIDTSFRSGEKGDNNKSVDSSRSTEEEEEDDDEDEAEAAHTAAVNLEIKR ILTEVLSKVTNELFDEIATKILDEDNQMVEGNLTASTQKASAEVVVRAKAEEPAAEESEKSSSSAPAGNLLGLVNYASDQDDDDEIRSVEGGKLKAGGQI FGPKGTPQRNMTSSEFNGDGETANKDDKKSSLSKDVTKGADENERRQDTRHSRTERSEHHNGLKLRTKDRADGIGERGKESVSKKRSSHSDVKEAKESEK VTKGSSKDDSSRKRERAKEKKEDRGRLKSANESSRGKRRHSSSDDDSSNEESDDSKRKRHSRRQLSPSPVRSRRRQVSRSPHNKHSQRRHSPYSSIETSS SCCCLMEPRKISRRRNQEITKQEPDKNPVRIVQEETSDPDANITWDHEPEEEPAAVCSAKEFYASSSSQRKKVRPSSSREQERSRGFDNKGFERRSFRFN RQPFVPPLPRSRSFRGLEWEPSLSSVQELSQEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	0	1
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	2.4	0.8762
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	3.3	0.8879
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	3.3	0.8589
AT2G39580			unknown protein		Lus10005958 [exp]	5.3	0.8674
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	6.0	0.8734
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	7.1	0.8596
AT1G70620			cyclin-related (.1.2.3)		Lus10026699 [exp]	7.5	0.8515
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	8.1	0.8828
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006029 [exp]	9.2	0.8695
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	12.0	0.8583

Compare expression of checked genes

Lus10000440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.