Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48240 62 / 7e-13 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 61 / 5e-12 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 50 / 2e-08 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT5G63130 50 / 3e-08 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 47 / 8e-07 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 45 / 5e-06 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 45 / 6e-06 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 45 / 7e-06 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 42 / 6e-05 PB1 domain-containing protein tyrosine kinase (.1) AT2G35050 42 / 7e-05 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026700 [exp] 199 / 3e-66 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10036862 [exp] 71 / 9e-16 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10006214 [exp] 70 / 1e-15 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10002938 [exp] 57 / 2e-10 AT3G48240 130 / 1e-38 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019490 [exp] 55 / 6e-10 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10043341 [exp] 55 / 9e-10 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 49 / 2e-07 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 48 / 5e-07 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 47 / 9e-07 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186500 [exp] 102 / 6e-28 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 87 / 1e-21 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.015G083400 [exp] 52 / 4e-09 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G085000 [exp] 51 / 2e-08 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 46 / 2e-06 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 45 / 5e-06 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.018G095800 [exp] 45 / 5e-06 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 44 / 9e-06 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.011G041100 [exp] 44 / 1e-05 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 43 / 2e-05 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10000441 pacid=23156107 polypeptide=Lus10000441 locus=Lus10000441.g ID=Lus10000441.BGIv1.0 annot-version=v1.0 ATGGATTTACTGACGAAATTGGTGGAGTTCTCTGGAGCTCCGGTGAGCTTGCGGTGTCAATTGCCGGAGGCCGATCTGGACGATGCTTTAGTCTCGATAG TCTCCGACGAGGATCTGGCGAACTTGATCGAGGTGTACGGCCGATTCTCGTCTCTAAAGATTCGGGCTTTCCTTTCGATTCCGAGGAATCGGTCCCCTCT GCTTTCCTCTTCTTCTTCATCGTCGTTGTCGTCTTCCTCTTCGTCTTTGTCGTCAGCTTCATCGTCGAATTCTTCTTCTGCGGCGACGATCGGTAGTCCG AGGTGTTCTCGGTGTCGGATTCCGAAACCACCGGCGAAGAAGGTTGCCGCCGGTTATTATGCTCCGGGGAGCCACGGTGGTCGTGTGTACCTTGTACACA ACGGTAATCACTGGCAATAA
AA sequence Show only first row Show all	>Lus10000441 pacid=23156107 polypeptide=Lus10000441 locus=Lus10000441.g ID=Lus10000441.BGIv1.0 annot-version=v1.0 MDLLTKLVEFSGAPVSLRCQLPEADLDDALVSIVSDEDLANLIEVYGRFSSLKIRAFLSIPRNRSPLLSSSSSSSLSSSSSSLSSASSSNSSSAATIGSP RCSRCRIPKPPAKKVAAGYYAPGSHGGRVYLVHNGNHWQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	0	1
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	2.2	0.9738
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	2.6	0.9797
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10007727 [exp]	3.0	0.9668
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	3.2	0.9764
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	4.9	0.9761
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	6.9	0.9742
AT3G01430			unknown protein		Lus10014527 [exp]	7.5	0.9714
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	8.1	0.9590
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	8.5	0.9721
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	8.5	0.9637

Compare expression of checked genes

Lus10000441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.