Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67900 753 / 0 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 526 / 0 Phototropic-responsive NPH3 family protein (.1) AT2G14820 435 / 8e-145 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G47800 417 / 8e-139 Phototropic-responsive NPH3 family protein (.1) AT4G37590 404 / 1e-133 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 393 / 3e-129 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G31820 385 / 2e-126 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G23050 366 / 3e-120 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT5G13600 325 / 5e-103 Phototropic-responsive NPH3 family protein (.1) AT1G30440 325 / 3e-102 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014632 [exp] 447 / 1e-149 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 442 / 2e-147 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10039099 [exp] 429 / 8e-143 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 420 / 6e-139 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 385 / 3e-126 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10038763 [exp] 384 / 8e-126 AT5G47800 612 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 382 / 4e-125 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 371 / 5e-116 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 328 / 2e-103 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046800 [exp] 847 / 0 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 840 / 0 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.006G003000 [exp] 461 / 4e-156 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 461 / 2e-155 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.016G003700 [exp] 457 / 5e-154 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 453 / 3e-152 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 431 / 2e-143 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 429 / 5e-143 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 410 / 2e-135 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 380 / 5e-123 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10000443 pacid=23156105 polypeptide=Lus10000443 locus=Lus10000443.g ID=Lus10000443.BGIv1.0 annot-version=v1.0 ATGAAGTTCATGAAGCTTGGTTCAAAACCAGACACTTTCTACACTTGTGAATCCATCAGGTCTGTGTCATCAGAAGTCTCCAGTGATCTCATCATCCAAG TCAAAGGAACCAGATACTTGCTTCACAAGTTTCCTCTGCTTTCAAAGTGTCTAAGGCTACAAAGGCTATGTACAGACTCACCAGAATCAACCAACCACCA GCACCAAATCCTGCAGCTCCCGGATTTCCCAGGCGGGGCCGAGGCATTCGAGCTCTGTGCCAAATTCTGCTATGGCATCACAATCACACTGAGTGCATAC AACATTGTGTCAGCAAGGTGTGCAGCTGAGTACCTCCAGATGACCGAGGACGCCGAAAAGGGTAACTTGATCTACAAGCTTGAAGTGTTCCTCAACTCAT GTGTTCTCCATGGCTGGAAAGACTCAATTGTCACACTACAGACCACAAAGATGCTGCCTTTATGGTCGGAGGATCTCGGAATCACATCCCGGTGTATCGA TGCTGTCACTTCAAAGATTCTCAGCAACCCTTCGAAAGTCAGCCTTTCACATAGCTACTCAAGAAGGGGAGGAATTAATGAGGATGTTGTTTCTTGCAAT GGTGGTCAAAGTCAGAGGAGTAGAGGGTTTTGGTGGGGTGAGGATATGGCTGAGTTAGGGATTGACTTGTATTGGAGAGCCATGATTGCTGTGAAATCTG GTGGCAAAGTTAGGTTTAGTGTCATTGGTGATGCTTTGAAGATTTATGCAGCTAGATGGCTTCCCAGAATACCAGTTTCTGCAGCAGGAAATGGCCACTG TGGACAAGCTGCAGGTTCTGATCATGATTCAGATTCTGATTCACCATCCGAGGAAGTGAATAATTCAAGGCCAAAGCTGATTCTGGAGTCAATAATCAGC TTATTACCGGTCGAAAAGGGCACGGTTTCGTGTAGCTTCTTACTCAAGCTACTGAAAGCTGCAAGCATTCTGAATGTGTCATCATCAACAAAGATGGAGT TAGCAAGAAGAGTTGGACTTCAGCTAGAGGAAGCTACAGCAAGTGACTTGCTTATACCGCAGCTCTCGAATTCGAACAACCGAGTGGGGCCACCATTGTT GTATGATGTGGACATGGTTCTGATCATACTAGAGCAGTTCATGCTACAAGGGCAGAGCCCTCCGACTAGCCCTCCAAGATCGAAGCTGAAGCTAGCGAGT TTCGAGAGGAGGAGGAGATCAAGGTCAGCTGAGAACATAGTTGAATTGGATTTCCAGGAGAGCAGAAGATCATCCTCTGCTTCACATAGCTGCAAGCTGA AAGTTGCCAAGCTTGTTGATAGGTACTTGCAGGAGATTTCAAGGGATGTGAATCTGCCATTGTCAAAGTTCTTGGCTGTTGCTGAGATGATTCCTCAGTT CTCCAGGCTTGACCATGATGATCTCTACAGAGCCATTGACATCTATCTCAAGGCACATCCAGACTTGAACAAGAGTGAGAGGAAGAGGCTATGCAGAATC TTGGACTGCAAGAAACTGTCAATGGAAGCATGTATGCATGCAGCACAGAATGAGCTACTCCCACTAAGAGTAGTGGTACAAGTCCTGTTCTTTGAGCAAG CCAGAACAGCAATGTCCAACGGTGGCAAAGTGACCGAGCTACCAAGCAACTTGAAGGCACTCCTGGCATCAAACGGGATCGACCCATCTTCGAGATCGAT GGCTCCAGAGGACCAATGGAGTAGTGTGTCTGCAGGGCTCAAGTCCCCGAAGTCCTCGAAGCTCTCAACTTTGAGGATGAAGCTTGCTGAAGATCATGAT GGTGACAATGACTTGGATGATGATCTTCAGTCAGTAGGGCTTGGAAGTAGGTCTTCAAAGTTCAAGGCTTTCTGTGCTATTCCAACTAGGCCTAAGAAGA TGTTCAATAAGTTGATGTCTATTAACAGAAGCTCAAGTGAAAAAAGTTGA
AA sequence Show only first row Show all	>Lus10000443 pacid=23156105 polypeptide=Lus10000443 locus=Lus10000443.g ID=Lus10000443.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDTFYTCESIRSVSSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCTDSPESTNHQHQILQLPDFPGGAEAFELCAKFCYGITITLSAY NIVSARCAAEYLQMTEDAEKGNLIYKLEVFLNSCVLHGWKDSIVTLQTTKMLPLWSEDLGITSRCIDAVTSKILSNPSKVSLSHSYSRRGGINEDVVSCN GGQSQRSRGFWWGEDMAELGIDLYWRAMIAVKSGGKVRFSVIGDALKIYAARWLPRIPVSAAGNGHCGQAAGSDHDSDSDSPSEEVNNSRPKLILESIIS LLPVEKGTVSCSFLLKLLKAASILNVSSSTKMELARRVGLQLEEATASDLLIPQLSNSNNRVGPPLLYDVDMVLIILEQFMLQGQSPPTSPPRSKLKLAS FERRRRSRSAENIVELDFQESRRSSSASHSCKLKVAKLVDRYLQEISRDVNLPLSKFLAVAEMIPQFSRLDHDDLYRAIDIYLKAHPDLNKSERKRLCRI LDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARTAMSNGGKVTELPSNLKALLASNGIDPSSRSMAPEDQWSSVSAGLKSPKSSKLSTLRMKLAEDHD GDNDLDDDLQSVGLGSRSSKFKAFCAIPTRPKKMFNKLMSINRSSSEKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10000443 [exp]	0	1
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10026702 [exp]	1.0	0.8563
AT3G26380			Melibiase family protein (.1)		Lus10006226 [exp]	3.5	0.8190
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	10.5	0.8292
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	14.0	0.8204
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	14.7	0.7677
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	18.1	0.8256
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	21.4	0.7819
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	22.3	0.8260
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	25.5	0.7725
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10035193 [exp]	27.4	0.7996

Compare expression of checked genes

Lus10000443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.