Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 191 / 7e-60 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 156 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G49050 147 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030391 [exp] 150 / 1e-44 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 150 / 6e-44 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10039240 [exp] 147 / 5e-43 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 144 / 8e-42 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086900 [exp] 212 / 1e-67 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 209 / 1e-66 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 162 / 7e-49 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 162 / 1e-48 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 158 / 4e-47 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 152 / 4e-45 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region
Representative CDS sequence Show only first row Show all	>Lus10000444 pacid=23157562 polypeptide=Lus10000444 locus=Lus10000444.g ID=Lus10000444.BGIv1.0 annot-version=v1.0 ATGTGGAAACGATGCACCTACATCGGCTCCGACGACAGCGCCACGTGGACAAACGCCACCCAAGACGAATTCGCTGACGTGCCGCGAATCTGCCGCCTAA TCCTCGCCGTCTACGAGACCGACCTCTCCAACCCTAACTACATCCCCGCCGCCGGAAACTCCCTCCGGCAAGACTGCCTCATCAAACGAGTCACCTACAA GCAAGCCAACGGCTGCTGCACTCCCTACATAATCTACCGCGACGACGTCAATAAAGAGATCGTCTTGGCCATGAGAGGGCTCAATTTGGCTAAAGAAGGG GATTACAAAGTGTTGCTGGATAACAAATTGGGGAGGCAGATGTTCGACGGCGGGTATGTTCATCATGGGGTGTTGAAATCTGCCATTTGGGGGCTGGATC AGGAAGGGGATAATTTGAGGAGGCTGTGGGAGGAGACTGGGTAA
AA sequence Show only first row Show all	>Lus10000444 pacid=23157562 polypeptide=Lus10000444 locus=Lus10000444.g ID=Lus10000444.BGIv1.0 annot-version=v1.0 MWKRCTYIGSDDSATWTNATQDEFADVPRICRLILAVYETDLSNPNYIPAAGNSLRQDCLIKRVTYKQANGCCTPYIIYRDDVNKEIVLAMRGLNLAKEG DYKVLLDNKLGRQMFDGGYVHHGVLKSAIWGLDQEGDNLRRLWEETG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	0	1
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	2.8	0.8702
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	4.0	0.8666
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	9.2	0.8536
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	11.0	0.8610
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	13.8	0.8381
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10040659 [exp]	16.3	0.7458
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	16.9	0.7797
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022081 [exp]	17.6	0.7106
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	19.2	0.7299
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	19.3	0.8302

Compare expression of checked genes

Lus10000444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.