Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 342 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 294 / 2e-97 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 249 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G42450 45 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 44 / 7e-05 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010983 [exp] 479 / 6e-173 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10039240 [exp] 277 / 2e-91 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 275 / 2e-90 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 260 / 2e-84 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 198 / 1e-60 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 48 / 7e-06 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 47 / 1e-05 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 47 / 1e-05 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 46 / 2e-05 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086900 [exp] 393 / 3e-136 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G130000 [exp] 384 / 1e-132 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 295 / 8e-98 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 292 / 6e-97 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 263 / 2e-85 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 259 / 7e-84 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G067900 [exp] 46 / 2e-05 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 44 / 0.0001 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G005800 [exp] 44 / 0.0001 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 43 / 0.0002 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10000445 pacid=23157561 polypeptide=Lus10000445 locus=Lus10000445.g ID=Lus10000445.BGIv1.0 annot-version=v1.0 ATGGTTTTTGCTGGGCATTCGTTGGGTTCTGGTGTGGCGGCGTTGTTGAGTGTGATTGTGGTGAATCATAGGGAGAGATTGGGTGGGATTCCTAGGGAGA AGATCAAGTGTTATGCTATTGCTCCTGCTAGGTGTATGTCTCTTAATTTGGCTGTCAAGTATGCTGATGTTATTCACTCCATTGTCTTGCAGGATGATTT CCTGCCAAGAACTCCGACTCCGTTGGAAGACATTTTCAAGTCAATCTTCTGCTTGCCTTGCTTGCTGTTTTTGGTCTGCTTGAGGGATACATTCATCCCA GAAGGTAAGAAGCTCAGAGATCCCAGAAGACTGTACGCTCCGGGGAGAATCTATCACATCGTCGAGCGGAAATTCTGCCAGTGTGGGAGGTTTCCGCCTG AGATTAGGACCGCCATTCCGGTAGATGGAAGATTCGAACACATCGTGCTATCGTGCAATGCCACTTCGGATCATGCAATCATCTGGATCGAACGGGAAGC AGAGAAGGCACTAAGTAGAATGAAGGAAGAGAACAGCAGGGGCACGACAGCAGCTCCGAAAGCACAGAAAATGGAGAGGATTCAGACACTGGAAAAGGAG CACAAAGACGCACTGGACAGAGCAGTGAGCTTGAATGTACCGCACGCTGTAAGCGATGCAGAGACAGGCGAAGAACAAGGAGAAGAAGCATCTGTAAGCA AAGAGGAGGAAGGAGAACATAGCCAATCCCAGGAGAAAGAGAAGGGAGAAGGAAGCGGGAAGAGCAAGTCATCAGGGAGAACCAACTGGGATGAACTTGT AAAGAAATTGTTCAAAAAGGGTGACTCAGGTGTTGTGACTGTTAACAAAGATGTAACAATAACTGAAGACCGGTAG
AA sequence Show only first row Show all	>Lus10000445 pacid=23157561 polypeptide=Lus10000445 locus=Lus10000445.g ID=Lus10000445.BGIv1.0 annot-version=v1.0 MVFAGHSLGSGVAALLSVIVVNHRERLGGIPREKIKCYAIAPARCMSLNLAVKYADVIHSIVLQDDFLPRTPTPLEDIFKSIFCLPCLLFLVCLRDTFIP EGKKLRDPRRLYAPGRIYHIVERKFCQCGRFPPEIRTAIPVDGRFEHIVLSCNATSDHAIIWIEREAEKALSRMKEENSRGTTAAPKAQKMERIQTLEKE HKDALDRAVSLNVPHAVSDAETGEEQGEEASVSKEEEGEHSQSQEKEKGEGSGKSKSSGRTNWDELVKKLFKKGDSGVVTVNKDVTITEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	0	1
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	1.0	0.9637
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	1.4	0.9229
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	4.0	0.8666
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	4.9	0.8843
AT4G33780			unknown protein		Lus10037250 [exp]	6.5	0.8937
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	7.2	0.8535
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	9.8	0.8515
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	10.4	0.8447
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	10.7	0.8797
AT3G13880			Tetratricopeptide repeat (TPR)...		Lus10004114 [exp]	11.1	0.8315

Compare expression of checked genes

Lus10000445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.