Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37720 201 / 3e-63 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 199 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G59950 147 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 142 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G23350 57 / 6e-09 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G10400 53 / 5e-08 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G16940 52 / 2e-07 Splicing factor, CC1-like (.1.2.3) AT1G49760 51 / 7e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 48 / 6e-06 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 47 / 1e-05 PAB1 poly(A) binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010982 [exp] 389 / 5e-136 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10024413 [exp] 144 / 2e-41 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 144 / 3e-41 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10004946 [exp] 144 / 3e-41 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 144 / 4e-41 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 138 / 4e-39 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023417 [exp] 108 / 1e-27 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10009804 [exp] 92 / 3e-23 ND / Lus10040851 [exp] 92 / 6e-21 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087000 [exp] 265 / 3e-88 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.017G129900 [exp] 264 / 8e-88 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G093944 [exp] 147 / 9e-43 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 140 / 8e-40 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.010G208000 [exp] 115 / 2e-30 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 93 / 1e-22 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 57 / 4e-09 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.005G198500 [exp] 51 / 5e-07 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.014G025400 [exp] 48 / 5e-06 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 47 / 1e-05 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10000446 pacid=23157556 polypeptide=Lus10000446 locus=Lus10000446.g ID=Lus10000446.BGIv1.0 annot-version=v1.0 ATGGCCACCTCTGTTGATATGTCTCTTGATGATATTATTAAGAGCAGTAGAGGGAAAGGCAGAGGTCGAGTTAATGCTCGACGTGGAAGAGGTTCTGATA GGCCATTCAATGCTGGAAAAATGATGGGTCCAGTTCGCAGGGGTCGGTTTGGAGTTAATACTCGGCCATCCCAGTTTGCAATTTCTAAGGCAAGCTCAAA ACTGAGGGTTCGACCATCAGTTAGGCTATCTATGAAAGGTGGCGAGGACTGTGATGGTTGTTTAGATGGGGAGATCCCTGCTCGCAAAGTTAGGACTTTG CCCTGGCAGCATGATTTGTTTGAGGATAGCATTAGAGCTGCAGGAATCACAGGCATTGAAGTTGGTACAAAGTTGTATGTGTCAAACTTGGATCATAAGG TGTCAAATGATGACATAAGGGAGCTGTTTGCTGAGATTGGAGATCTAAAACGATATGCTGTTCACTTTGACAGAACTGGTCGTCCAAGTGGCTCTGCTGA AGTGTTATTCACAAGGAGGAGCGATGCATTTGCTGCTCTCAAGAAGTATAACAATGTGCTCTTGGATGGGAAGCCTATGAAGATCGAAATCGTGGGTGCC AATACAGATGTCCCCATCTCTGCTCGAGTAAATGTCACTGGAGTAAATGGAAGGCCGAAGAGGACTGTTGTTTTGACGTCCGGACAAGGCCGTGGAAGAG GAGGCTTTGGTGCAGTGATGCCGGGCAGGGGTGCTGGACAAAATAGGCGTGGAGGTGGTGGATTTCTCGGTGCAGGCCTAGGTCGTGGAGCCGGTGGACG TGGCAGTGGAAACACTGGACGCGGTGGTGCTAGAGCTGGAAGAGGAGGAGGGCGTAGACGTGGGAAGAAGGCTGTGGAGAAATCGGCAGATCAGCTGGAC AAGGAATTGGAGAACTATCACAATGAAGCTATGCAGTCTTAA
AA sequence Show only first row Show all	>Lus10000446 pacid=23157556 polypeptide=Lus10000446 locus=Lus10000446.g ID=Lus10000446.BGIv1.0 annot-version=v1.0 MATSVDMSLDDIIKSSRGKGRGRVNARRGRGSDRPFNAGKMMGPVRRGRFGVNTRPSQFAISKASSKLRVRPSVRLSMKGGEDCDGCLDGEIPARKVRTL PWQHDLFEDSIRAAGITGIEVGTKLYVSNLDHKVSNDDIRELFAEIGDLKRYAVHFDRTGRPSGSAEVLFTRRSDAFAALKKYNNVLLDGKPMKIEIVGA NTDVPISARVNVTGVNGRPKRTVVLTSGQGRGRGGFGAVMPGRGAGQNRRGGGGFLGAGLGRGAGGRGSGNTGRGGARAGRGGGRRRGKKAVEKSADQLD KELENYHNEAMQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	0	1
AT1G10800			unknown protein		Lus10037441 [exp]	4.5	0.9223
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	4.9	0.9173
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	9.2	0.9142
AT5G11500			unknown protein		Lus10037899 [exp]	10.6	0.9104
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	12.4	0.9058
					Lus10040954 [exp]	12.7	0.9082
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	15.8	0.8606
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	17.6	0.9054
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10012202 [exp]	18.3	0.9025
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	19.2	0.9078

Compare expression of checked genes

Lus10000446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.