Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54880 179 / 5e-53 DTW domain-containing protein (.1) AT2G41750 45 / 3e-05 DTW domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423900 [exp] 277 / 4e-91 AT5G54880 274 / 3e-89 DTW domain-containing protein (.1) Potri.006G051600 [exp] 50 / 6e-07 AT2G41750 204 / 1e-65 DTW domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03942 [flax] [poplar] DTW DTW domain
Representative CDS sequence Show only first row Show all	>Lus10000447 pacid=23157553 polypeptide=Lus10000447 locus=Lus10000447.g ID=Lus10000447.BGIv1.0 annot-version=v1.0 ATGGCCAAACGGGTCTTTATACAGACCCGGATACCGACCCGAGACATCCCAGGGATTCCACACCACGCCGTACTTCTCTCTTACAGTCCACGGCCTCCTC CGCCATTGTTCGATTACCAGAGCATCGAGTGGCGCCGGCGCCCGCGACAACCCCTAAAAATGGCGGCAATGGGATCTTCCGAATCGAAGAAGCGACCCAC TTGTCCTTCTTGCTCCAAGCCCCTCCAGATCTGCCTCTGCGCCAAGCTAAAGCACCGCGGCCTCCTCGAAAACAAGGTCAGCGTCACCATTCTCCAGCAC AGTCTAGAGACGAAGCACCCTCTTAATTCCGCCAGAATCGCTAAGATCGGGCTCAAGAATGTCCATTTGCATACCGTCTCCGACGTCCTCTCCGACGCCC GCTTCGTCATCCAGTTTCCGACTTCCATCATCACTATGAAGATCTTAAAAGGCGGAGGCTTTGTCGATTTGAACTGTTGTGAATCGATGGCAAACTTTTC GAATTTCGACGAGCTTTTATCTTCTCCTTCATCGGTTAAAATTGCTCTTGAAGACGGATTTACTGTTCAGAAGTTGACCAGGAGAAAGATCAATGGCGGT GATTTGAACCAAGAGGAATACACAGAGTTTGAGTTGAAGATTCCTGCAGGATCGGTGCTTCTGTATCCGAGTGAAGAATCGGTGAGCGTTGACGATCTGA GAGGGATGAATATCGAAGTGAAGAATCTGATCGTTTTGGACGGGACATGGTCCAAGGCGAAGAAGATGTACAAGGAGAATCCATGGTTGAAGCTTCTGCC ACATTTGAGGCTGGATTTGGAGGAGTCTAGTCTGTTTAGTGAGGTTAGAAGGCAGCCGAGAGCTGGATGTTTGTCTACTATTGAGAGCATCGTTTATGCT CTGAAGGAAGTGGGGGAGAAACCTGAGGAGCGATTGGATCAGCTGTTGCAGGTTTTGGGCTCCATGGTTGCTGATCAGAGGCGGTTTCGTGACCAGAGGC TGAGTCAAATCTCCAGTTCGTCCACTGCTCGTTAA
AA sequence Show only first row Show all	>Lus10000447 pacid=23157553 polypeptide=Lus10000447 locus=Lus10000447.g ID=Lus10000447.BGIv1.0 annot-version=v1.0 MAKRVFIQTRIPTRDIPGIPHHAVLLSYSPRPPPPLFDYQSIEWRRRPRQPLKMAAMGSSESKKRPTCPSCSKPLQICLCAKLKHRGLLENKVSVTILQH SLETKHPLNSARIAKIGLKNVHLHTVSDVLSDARFVIQFPTSIITMKILKGGGFVDLNCCESMANFSNFDELLSSPSSVKIALEDGFTVQKLTRRKINGG DLNQEEYTEFELKIPAGSVLLYPSEESVSVDDLRGMNIEVKNLIVLDGTWSKAKKMYKENPWLKLLPHLRLDLEESSLFSEVRRQPRAGCLSTIESIVYA LKEVGEKPEERLDQLLQVLGSMVADQRRFRDQRLSQISSSSTAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	0	1
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	1.4	0.8362
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	7.1	0.7949
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	10.0	0.7884
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001605 [exp]	12.3	0.7983
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	18.2	0.7707
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	23.0	0.7814
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	23.2	0.7582
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	25.9	0.7916
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10007350 [exp]	28.5	0.7482
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	30.7	0.7827

Compare expression of checked genes

Lus10000447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.