Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77840 364 / 2e-123 Translation initiation factor IF2/IF5 (.1) AT1G36730 347 / 9e-117 Translation initiation factor IF2/IF5 (.1) AT5G20920 54 / 4e-08 EIF2 BETA, EMB1401, EIF2BETA embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) AT5G36230 46 / 3e-05 ARM repeat superfamily protein (.1) AT1G65220 46 / 4e-05 ARM repeat superfamily protein (.1) AT2G34970 43 / 0.0004 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002283 [exp] 522 / 0 AT1G36730 505 / 6e-178 Translation initiation factor IF2/IF5 (.1) Lus10004057 [exp] 520 / 0 AT1G36730 505 / 4e-178 Translation initiation factor IF2/IF5 (.1) Lus10010980 [exp] 380 / 4e-132 AT1G36730 184 / 2e-55 Translation initiation factor IF2/IF5 (.1) Lus10010981 [exp] 223 / 2e-72 AT1G36730 282 / 3e-95 Translation initiation factor IF2/IF5 (.1) Lus10007559 [exp] 53 / 1e-07 AT5G20920 385 / 3e-136 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Lus10029667 [exp] 46 / 1e-05 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1) Lus10042703 [exp] 47 / 3e-05 AT5G36230 631 / 0.0 ARM repeat superfamily protein (.1) Lus10018182 [exp] 46 / 4e-05 AT5G36230 623 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093600 [exp] 470 / 5e-165 AT1G77840 514 / 0.0 Translation initiation factor IF2/IF5 (.1) Potri.004G112200 [exp] 451 / 9e-158 AT1G77840 493 / 2e-173 Translation initiation factor IF2/IF5 (.1) Potri.017G122200 [exp] 419 / 1e-144 AT1G77840 456 / 1e-158 Translation initiation factor IF2/IF5 (.1) Potri.013G158400 [exp] 54 / 6e-08 AT5G20920 396 / 7e-141 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G131200 [exp] 54 / 7e-08 AT5G20920 399 / 7e-142 embryo defective 1401, eukaryotic translation initiation factor 2 beta subunit (.1.2.3) Potri.019G053600 [exp] 46 / 3e-05 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1) Potri.013G085600 [exp] 46 / 3e-05 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.005G045200 [exp] 43 / 0.0004 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01873 [flax] [poplar] eIF-5_eIF-2B Domain found in IF2B/IF5 CL0020 [flax] [poplar] TPR PF02020 [flax] [poplar] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Lus10000448 pacid=23157559 polypeptide=Lus10000448 locus=Lus10000448.g ID=Lus10000448.BGIv1.0 annot-version=v1.0 ATGGTTGACATTGCAAAGGCTTTGGCGAGGCCTGCTTCTTATACTACAAAGTATTTTGGTTGTGAGCTCGGTGCTCAGTCGAAATTCGACGAGAAGACTG GTATTTCGCTGGTGAATGGTCAGCACGACACTGCAAAGCTTGCGGGGCTTTTGGAGATCTTCATAAAGAAGTATGTTCAGTGTTATGGCTGTGGGAATCC TGAAACCGAGATACTTATCACCAAAAGCCAGATGCTCCAGCTTAAATGTGCTGCCTGTGGTTTTGTCTCTGATGTGGATATGAGAGATAAGCTGACTACT TTTATCTTGAAGAATCCGCCCGAAGCAAAGAAAGGGTCTAAAGACAAGAAGGCAATGAGGAGAGCTGAGAAGGAACGGCTTAAGGAAGGCGAGGCAGCTG ATGAGGAGCTGAAGAAACTGAAGAAGGATGTCAAGAAGAAGGTTCCTCCTTCTAAGATGGGAAGTACGAAGAAGAAAGCTGGTGGCTCGGATGAAGAACG TGTATCGCCAACTCACAGTCAGGTTCAGGTTGATGAGAAGGAAGAGGGCAGTGATGATGACGATGATGATGTGCAATGGCACACTGACACATCAGCAGAA GCAGCTCGTAAACGGATTCAGGAACAATTGAGTGCTGCAACTGCCGAAATGGTCATGCTTACTACAATCGAAACAGTAAAGAAGGCCAAGGATACTGCGA AAGCGAATGGAAGCCCTAAGAAAGCTGTTCCTCCGAAACCGGTGACTCTCGCTGAAGCAGTGAAAGCAAGCATCGGCAAAGGACTTGCTGCCAGCCAGTT GCCTGGTGTTATGGATTCGCTATCTGGATCAGCAAAAGAAAAGATGGATGCTTTGTTCGCGGCGTTGTTTCAGGGTACCGAGAAGGGGCTTGGGAAGGAG GTTGTGAAGAAGAAGAAATATCTCGCTGCTACACTTGCTCATTTTGGAGAAGGTTCCCAGTTGGTTCTACTCGAATCGATCCAAGGTTTCTTTGAGAAGT CCAATTCAGTGAAGGAAGTGGCTCTTGTTCTCAAAGCTCTCTATGATGCTGATGTGTTGGAGGAAGAGAACATTATGCAGTGGTACGAGAAGCTGAAGGG TGTCAATAAAGGTAACAAGATTGTGAAGAGTGCTGAGCCGTTTATTGATTGGCTCCAGAATGCGGAATCCGAGAGCGAAGAGGAATAA
AA sequence Show only first row Show all	>Lus10000448 pacid=23157559 polypeptide=Lus10000448 locus=Lus10000448.g ID=Lus10000448.BGIv1.0 annot-version=v1.0 MVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGQHDTAKLAGLLEIFIKKYVQCYGCGNPETEILITKSQMLQLKCAACGFVSDVDMRDKLTT FILKNPPEAKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKDVKKKVPPSKMGSTKKKAGGSDEERVSPTHSQVQVDEKEEGSDDDDDDVQWHTDTSAE AARKRIQEQLSAATAEMVMLTTIETVKKAKDTAKANGSPKKAVPPKPVTLAEAVKASIGKGLAASQLPGVMDSLSGSAKEKMDALFAALFQGTEKGLGKE VVKKKKYLAATLAHFGEGSQLVLLESIQGFFEKSNSVKEVALVLKALYDADVLEEENIMQWYEKLKGVNKGNKIVKSAEPFIDWLQNAESESEEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36730			Translation initiation factor ...		Lus10000448 [exp]	0	1
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	2.2	0.8718
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10010982 [exp]	2.4	0.8325
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	5.0	0.8246
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Lus10011837 [exp]	12.0	0.8235
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	12.7	0.8063
AT5G25265			unknown protein		Lus10005347 [exp]	13.7	0.8400
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	16.7	0.7700
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	18.1	0.8261
AT1G19130			unknown protein		Lus10039920 [exp]	19.3	0.8011
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	29.7	0.7700

Compare expression of checked genes

Lus10000448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.