Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66670 284 / 6e-95 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 181 / 4e-55 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G02560 173 / 4e-52 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G23140 146 / 3e-42 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G11750 141 / 7e-40 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) ATCG00670 127 / 1e-35 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT1G12410 119 / 1e-31 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) AT1G09130 103 / 4e-25 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G17040 96 / 2e-22 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G49970 96 / 3e-22 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010979 [exp] 629 / 0 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10007589 [exp] 180 / 9e-55 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10012156 [exp] 178 / 5e-54 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10002422 [exp] 172 / 8e-52 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 172 / 7e-51 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 154 / 1e-44 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 154 / 1e-44 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010196 [exp] 150 / 2e-43 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1) Lus10017397 [exp] 147 / 1e-42 AT5G23140 394 / 1e-140 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092100 [exp] 327 / 2e-111 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.003G103300 [exp] 179 / 3e-54 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.002G195200 [exp] 173 / 7e-52 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.014G119700 [exp] 173 / 8e-52 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.007G071700 [exp] 150 / 2e-43 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 146 / 2e-42 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G130601 [exp] 145 / 5e-42 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.004G152900 [exp] 142 / 1e-40 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 141 / 4e-40 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.001G115900 [exp] 106 / 1e-26 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10000449 pacid=23157563 polypeptide=Lus10000449 locus=Lus10000449.g ID=Lus10000449.BGIv1.0 annot-version=v1.0 ATGGAGCTAGGTTTGACCTTCACTGCACCGTCGCAATCAGCTACCCCTCTCTGCTTCTCCAATTATGCTTTCCTCTGCCAGCAACGAAACCGATTACCAA TTAAGGCCGTGAGCAGCTCAAGCGTTACAGGAAAACGAACTCTGAGCAGCAACTGGGACACCAAGTGTTCATCCTCTTTGCCCATTTCGGCTCCCCGCAT GCCCGGATTCAAAGAGCTCGATACTACCAGGGTGCTCCTCAGTCAAAGAACTCTCTTTCTCAGCTCCGAGCTTGATGACATTGTAGCTGATCTTATCATA AACCAGCTCTTGTTCCTTGATGCTGATGATCCAACCAAGGACATCAAGATTATCATCAATTCGCCTGGTGGTTCTATCACTTCTGCAATGGGGATATATG ATGCGATCAAGTATTGCAAAGCTGATGTTTCGACTGTATGTTTCGGCATCGCGGCATCTATGGGAGCACTGATCCTTCTCAGTGGCACCGAAGGCAAGAG GTTTTGCATGCCCAATGCAAGGGTCATGATACATCAACTACATGGAATTGGCGGAGGCAGTCCATTAGACGGCCAGATAAGTGTGAAAGAAATGAACTAC CACATGCTAAAAGTCAACAAGATCATATCACGATCCACAGGCCAGCCACTCGAGAAGGTTGTAAAGGACACCGAGTATGATTACTACATGAACGCTTGGG AGGCTAAAGCTTACGGGATAGTGGACCAAGTGATTGACGATGGCAAACCAGGGCTGGTGGCACCTATCACGGATGCTTCCCCTGCACCAATTTACGGAGC CTCAAATTATTTGACTCCCGAGACTCGTGATGGAGCCCCCACCGACAAGATTTTGCCCTTAGAGCGTAGAAACTTGCAGGAAAAGGCGAAGGAGAAGGAC GACAAGCTGGTTTTCCGTCCAGGGGTCGATGATCCAAACACACTGTTGCTTTTTAGATGA
AA sequence Show only first row Show all	>Lus10000449 pacid=23157563 polypeptide=Lus10000449 locus=Lus10000449.g ID=Lus10000449.BGIv1.0 annot-version=v1.0 MELGLTFTAPSQSATPLCFSNYAFLCQQRNRLPIKAVSSSSVTGKRTLSSNWDTKCSSSLPISAPRMPGFKELDTTRVLLSQRTLFLSSELDDIVADLII NQLLFLDADDPTKDIKIIINSPGGSITSAMGIYDAIKYCKADVSTVCFGIAASMGALILLSGTEGKRFCMPNARVMIHQLHGIGGGSPLDGQISVKEMNY HMLKVNKIISRSTGQPLEKVVKDTEYDYYMNAWEAKAYGIVDQVIDDGKPGLVAPITDASPAPIYGASNYLTPETRDGAPTDKILPLERRNLQEKAKEKD DKLVFRPGVDDPNTLLLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	0	1
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	2.2	0.9347
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Lus10017965 [exp]	3.2	0.9207
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	3.2	0.9283
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Lus10027610 [exp]	6.3	0.9219
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	7.1	0.9262
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	7.7	0.9094
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	10.2	0.8876
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	12.7	0.9057
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	13.7	0.8939
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	14.1	0.8777

Compare expression of checked genes

Lus10000449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.