Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37850 454 / 1e-162 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G22940 50 / 8e-07 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010977 [exp] 543 / 0 AT5G37850 471 / 2e-169 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10028527 [exp] 488 / 1e-175 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10009119 [exp] 486 / 2e-174 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10001365 [exp] 44 / 0.0001 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10015466 [exp] 43 / 0.0002 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129000 [exp] 473 / 1e-169 AT5G37850 534 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Potri.003G015700 [exp] 49 / 1e-06 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF08543 [flax] [poplar] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Lus10000451 pacid=23157558 polypeptide=Lus10000451 locus=Lus10000451.g ID=Lus10000451.BGIv1.0 annot-version=v1.0 ATGAGCTCCAGCAAGTCGGAAACGGAGCCTCCGATCCTGTCTTTGGCTCTTCCTTCTGAGACCGGCCGGGTTCTTAGCATTCAGTCTCACACAGTGCAGG GATATGTTGGTTATCCAAGCTTCAAGGGACAAGTTTTGAATGGGCAACAACTGTGGGAACTGATAGAAGGCCTTGAAGCAAATAACTTGTTATTCTATAC TCACTTGCTAACAGGTTATATAGGCTCAGTTTCATTTCTGAACACCGTATTGGAGGTCGTCAATAAGCTTCGCACAATAAACCCCAAACTCACTTATGTT TGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTTCCTGAGGACCTGGTAGCAGTGTACAGAGAGAAGGTTGTTCCAGTGGCTTCAATGTTGACTC CTAATCAGTTTGAAGCTGAACAGTTAACTGGCTCCAGGATTGTGTCTGAAAGTGATGGCCGTGAGGCTTGCAATAAACTTCATGCTGCTGGACCTTCAAA GGTTGTGCTTACGAGCATTAACATAGGTGGTGGTCTTCTACTTATCGGCAGTCATCAGAAAAAAAAGGGCCAGTCGCCGCAACAATTCAAGATAGCCATA CCCAAAATTCCTGCTTATTTCACGGGAACAGGGGATTTAATGACTGCACTTCTACTTGGATGGAGCAATAAATACCCCGGCAACCTCGACAAGGCTGCGG AGCTTGCAGTATCAAGCTTGCAGTGTCTTCTGCAGAGGACACTGGATGACTATCAAAAGGCTGGTTATGATCCAGCAGCAAGCAGTTTGGAAATTAGATT GATTCAGAGTCAAGACGACGTTCGCAATCCGAATGTTCAATTCAAAGCTCAAAAGTATACTTGA
AA sequence Show only first row Show all	>Lus10000451 pacid=23157558 polypeptide=Lus10000451 locus=Lus10000451.g ID=Lus10000451.BGIv1.0 annot-version=v1.0 MSSSKSETEPPILSLALPSETGRVLSIQSHTVQGYVGYPSFKGQVLNGQQLWELIEGLEANNLLFYTHLLTGYIGSVSFLNTVLEVVNKLRTINPKLTYV CDPVMGDEGKLYVPEDLVAVYREKVVPVASMLTPNQFEAEQLTGSRIVSESDGREACNKLHAAGPSKVVLTSINIGGGLLLIGSHQKKKGQSPQQFKIAI PKIPAYFTGTGDLMTALLLGWSNKYPGNLDKAAELAVSSLQCLLQRTLDDYQKAGYDPAASSLEIRLIQSQDDVRNPNVQFKAQKYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	0	1
AT5G05550	Trihelix		sequence-specific DNA binding ...		Lus10028985 [exp]	1.0	0.9498
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	6.7	0.9076
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	9.1	0.9135
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	9.6	0.9094
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	12.2	0.8521
AT5G18920			Cox19-like CHCH family protein...		Lus10034006 [exp]	13.7	0.8777
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	14.0	0.8425
AT3G52230			unknown protein		Lus10028838 [exp]	15.5	0.8996
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10033464 [exp]	17.0	0.8912
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	17.0	0.9050

Compare expression of checked genes

Lus10000451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.