Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) AT5G15140 308 / 3e-102 Galactose mutarotase-like superfamily protein (.1) AT3G47800 299 / 2e-100 Galactose mutarotase-like superfamily protein (.1) AT3G01260 191 / 1e-57 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010976 [exp] 614 / 0 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 412 / 6e-145 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 316 / 5e-107 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 290 / 3e-96 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 286 / 6e-95 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 267 / 3e-88 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 243 / 2e-76 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 104 / 1e-27 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 88 / 1e-20 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129300 [exp] 460 / 6e-164 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 443 / 2e-157 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 314 / 3e-106 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 291 / 2e-97 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 291 / 3e-97 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 290 / 8e-97 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 284 / 2e-94 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10000452 pacid=23157555 polypeptide=Lus10000452 locus=Lus10000452.g ID=Lus10000452.BGIv1.0 annot-version=v1.0 ATGAGCATCACCGATCAGCAGCAGAATCCCAAGCAACAGCCGCCGCGCCTTTTCGAGCTCAACAATGGAACAATCCGCGCCCAAATCACCAACTTTGGCG CCGCAATTACCTCCCTCTCCGTCCCCGACAAGGACGGAAATTTCTCCGACATCGTGCTCGGCTTCGATTCCGTCCAAAATTACATGGAAGGGAATCCATG TTATTTCGGATGCATAGTTGGGCGAGTGGCGAACAGAATCAAAGATGGGAAATTTAGTCTCGACGGAGTTGACTATTCTCTTCCTGTCAACAATGGCCCC AACAGTCTTCACGGTGGTAACAAAGGTTTCGACAAAGTCGTGTGGGATGTTGTGGAACATAACAGTAGTAGCGAACAGCCATCAGTAACTTTCAAGTACA AAAGTCATGACGGCGAGGAAGGATACCCGGGAGATGTAAACGTGACTGCAACTTACACACTGACATCAAGCAACACAATGAGGCTGGATATGGAAGCAGT TCCCAAGGATAAGTCAACTCCGGTCAACTTAGCACAGCATACATACTGGAATCTAGGAGGGCACAAATCGGGCAGCATCCTCAACCATTCGGTTCAATTA TCAGCATCCAAGATCACTCCTGTCGACCATCACTCGATCCCGACAGGAGAGATTCTCCCGGTTAAAGGCACTCCTTTCGACTTCACGACCGAGAAAAGGG TGGAAGCTCGATTGGCGAAGGTGCTGAATTTGTGGACTGATGCTCCCGGTGTGCAATTCTACACTGCGAATTACGTGGATGGTGTTAAGGGGAAAGAAGG TACGGTTTACAAGAAGCATTCCGGGTTGTGTCTCGAGACTCAAGGGTTTCCGAATGCGGTCAATCAGTCCGGTTTCCCATCTGTTGTGGTTCAACCTGGT GAGAAGTATAAGCACAGAATGTTGTTTGAGTTCTCTGTGGAGAAATAA
AA sequence Show only first row Show all	>Lus10000452 pacid=23157555 polypeptide=Lus10000452 locus=Lus10000452.g ID=Lus10000452.BGIv1.0 annot-version=v1.0 MSITDQQQNPKQQPPRLFELNNGTIRAQITNFGAAITSLSVPDKDGNFSDIVLGFDSVQNYMEGNPCYFGCIVGRVANRIKDGKFSLDGVDYSLPVNNGP NSLHGGNKGFDKVVWDVVEHNSSSEQPSVTFKYKSHDGEEGYPGDVNVTATYTLTSSNTMRLDMEAVPKDKSTPVNLAQHTYWNLGGHKSGSILNHSVQL SASKITPVDHHSIPTGEILPVKGTPFDFTTEKRVEARLAKVLNLWTDAPGVQFYTANYVDGVKGKEGTVYKKHSGLCLETQGFPNAVNQSGFPSVVVQPG EKYKHRMLFEFSVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17940			Galactose mutarotase-like supe...		Lus10000452 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10026457 [exp]	9.0	0.8517
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	11.1	0.8959
AT2G37480			unknown protein		Lus10025314 [exp]	14.3	0.8760
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	21.6	0.8767
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	22.3	0.8665
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	39.5	0.8576
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	49.4	0.8176
AT3G61200			Thioesterase superfamily prote...		Lus10018847 [exp]	50.1	0.8567
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	50.5	0.8580
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10040259 [exp]	52.6	0.8608

Compare expression of checked genes

Lus10000452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.