Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 374 / 7e-132 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 291 / 2e-99 Chitinase family protein (.1) AT2G43580 276 / 1e-93 Chitinase family protein (.1) AT2G43570 259 / 7e-87 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 246 / 1e-81 Chitinase family protein (.1) AT2G43620 234 / 1e-76 Chitinase family protein (.1) AT1G56680 197 / 3e-62 Chitinase family protein (.1) AT3G47540 188 / 2e-59 Chitinase family protein (.1.2) AT2G43600 187 / 2e-58 Chitinase family protein (.1) AT1G02360 167 / 7e-51 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003231 [exp] 247 / 2e-82 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035621 [exp] 246 / 1e-79 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035625 [exp] 234 / 1e-76 AT3G54420 266 / 7e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 234 / 3e-76 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003587 [exp] 231 / 3e-76 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10024369 [exp] 230 / 5e-76 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10032794 [exp] 230 / 5e-76 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10010866 [exp] 229 / 1e-75 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035618 [exp] 229 / 1e-75 AT2G43590 229 / 1e-75 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093700 [exp] 401 / 1e-142 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 393 / 2e-139 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 360 / 2e-126 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 337 / 3e-117 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 327 / 2e-113 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 319 / 3e-110 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 319 / 4e-110 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.009G141700 [exp] 181 / 1e-55 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 180 / 1e-55 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 179 / 3e-55 AT1G02360 413 / 2e-147 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I CL0037 [flax] [poplar] PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10000453 pacid=23157554 polypeptide=Lus10000453 locus=Lus10000453.g ID=Lus10000453.BGIv1.0 annot-version=v1.0 ATGTCTCAACAATCCCTCCTTATCCTCTCAATCCTCCTCATCGGAGCTCTGGCCACGGTGGCCAGAGCTCAAAACTGCGGTTGCTCATCAACCGAGTGCT GCAGCCGCTGGGGCTTCTGCGGGACCACCTCCGAGCATTGCGGCGCCGGCTGCCAGAACGGCCCTTGCAACACCAACAACGTCCAAATCTCCGACATCGT CACCCCTGAATTCTTCAGCGGGATCATCGACCAGTCCGATAACAACTGCGCGGGGAAGAGCTTTTACTCCCGCGAAGTGTTCCTCCGAGCTCTCGAATCT TACTCTGGTTTCGCCCGCGTGGGATCGGAGGACGATTCCAAGCGCGAAATCGCCGCCTTCTTCGCCCACGTCACCCACGAGACCGGCAACTTTTGCTACA TAGAAGAGATAGAGGGGCCAACAAAGGACTACTGCGACGAGGATAACACACAGTACCCATGCAATCCATCCAAAGGATATTACGGGAGGGGCCCACTCCA GATATCGTGGAACTTCAACTACGGTCCCGCCGGAGAGGAGATCGGATTTGACGGCGTTAACTCACCTGAGACGGTGGCCAACGATCCATTGGTAGCTTTC AAGTCGGCGCTGTGGTTCTGGATGAACAACGTCCAACAGGTTATGGTACAGGGGTTTGGAGCCACCACCAGGGCGATTAACGGCGACTTGGAGTGCGACG GCGGGAATTCTGACACCGTTGCACGCCGTGCTGAGTACTACTCCGACTACTGCGGGCAGCTCGGGGTTGCTCCCGGAGATAATTTGACGTGTTAA
AA sequence Show only first row Show all	>Lus10000453 pacid=23157554 polypeptide=Lus10000453 locus=Lus10000453.g ID=Lus10000453.BGIv1.0 annot-version=v1.0 MSQQSLLILSILLIGALATVARAQNCGCSSTECCSRWGFCGTTSEHCGAGCQNGPCNTNNVQISDIVTPEFFSGIIDQSDNNCAGKSFYSREVFLRALES YSGFARVGSEDDSKREIAAFFAHVTHETGNFCYIEEIEGPTKDYCDEDNTQYPCNPSKGYYGRGPLQISWNFNYGPAGEEIGFDGVNSPETVANDPLVAF KSALWFWMNNVQQVMVQGFGATTRAINGDLECDGGNSDTVARRAEYYSDYCGQLGVAPGDNLTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000453 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	1.4	0.9385
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	1.7	0.9154
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	2.0	0.9325
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	2.8	0.9011
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	2.8	0.8811
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	3.2	0.8721
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10041460 [exp]	3.6	0.8485
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10002741 [exp]	4.0	0.8348
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	4.2	0.8970
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	6.9	0.8592

Compare expression of checked genes

Lus10000453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.