Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16610 69 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010975 [exp] 103 / 9e-28 AT5G16610 377 / 8e-127 unknown protein Lus10031615 [exp] 0 / 1 AT5G16610 84 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130400 [exp] 87 / 8e-21 AT5G16610 389 / 5e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000454 pacid=23157557 polypeptide=Lus10000454 locus=Lus10000454.g ID=Lus10000454.BGIv1.0 annot-version=v1.0 ATGGAATCGTTCATTGAAGATGGATTCGAAGACCTTGAAGCTGTGATGTCAAAGCTTTTTTCCCAACGGAGCTCCCTTGTAAAGCTTGCTCCCGTACGAA ATACAAATCTCTTGAAGCCTAATTATTGCTTAGCATGCTTATTCTCTCTTGTGGAACAGGTCGGAGAAGACTTGAGCGAGGGGGAAGCCAAGGTACTAAT GCAGTTCGGCTGGACACCAAACACCGGGGTAGCGATGATGCTGAACTACTGCGACAGGGTAGTACACAACAGGAAGAGCGAGAAGGAAAGCTTGGAGTGG AAATCCACTGATGGATGGATACAATGGCGGAACTGTCGTCTCCTCAACGGCTGCCGTCCAACTGGCAACAGAAGAATGCATCTTCAATGGCGACTTTTCT GGAGTTAA
AA sequence Show only first row Show all	>Lus10000454 pacid=23157557 polypeptide=Lus10000454 locus=Lus10000454.g ID=Lus10000454.BGIv1.0 annot-version=v1.0 MESFIEDGFEDLEAVMSKLFSQRSSLVKLAPVRNTNLLKPNYCLACLFSLVEQVGEDLSEGEAKVLMQFGWTPNTGVAMMLNYCDRVVHNRKSEKESLEW KSTDGWIQWRNCRLLNGCRPTGNRRMHLQWRLFWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16610			unknown protein		Lus10000454 [exp]	0	1
					Lus10006725 [exp]	8.5	0.6885
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	9.9	0.7176
					Lus10029490 [exp]	20.7	0.6477
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	30.2	0.6563
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10032795 [exp]	53.9	0.6229
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	55.6	0.6224
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Lus10036803 [exp]	57.8	0.6462
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	60.0	0.5936
AT5G53635			F-box/RNI-like/FBD-like domain...		Lus10037604 [exp]	75.2	0.5793
					Lus10036407 [exp]	91.0	0.6154

Compare expression of checked genes

Lus10000454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.