Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22040 204 / 1e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008373 [exp] 491 / 2e-177 AT5G22040 232 / 1e-75 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G001700 [exp] 147 / 2e-42 AT5G22040 155 / 7e-46 unknown protein Potri.008G015500 [exp] 137 / 8e-39 AT5G22040 150 / 9e-44 unknown protein Potri.010G244600 [exp] 132 / 2e-36 AT5G22040 162 / 3e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000457 pacid=23174752 polypeptide=Lus10000457 locus=Lus10000457.g ID=Lus10000457.BGIv1.0 annot-version=v1.0 ATGGATACTGACTGTGTTTTGACGACTATGCAGGCTGGACTGGACTTCTGGGAGATGAGACGGCAAGGCCAATATGCCGATTCTGGTTCCACTGCGTATG GTGGTGCTCAGATGCAGCATATTTCTAGTCAGAGGGTTGAACAGGACTCTGATCAGTTCCAAGGACAACTGGAGGCCTTCACTCCTGAGAGAGAGACTTC ATTTACTTCCTCAAAACCTGATGGCCAATGGCGGTGGGTGAGAGACGATCCAAAGGCGGCAAATTCCGTAGCAACCCAGATGTTCAATGAAGGTCAAGTA GTTGATGCATCAAGGGCCTACTTTCAGGGGAAAAGGTCAGATTCCCATATGCTGTTAGAGCAACAGGGGAACATTGATCCAAGATCCCGATCCCGTGAAG AAGATGGGCAGAGCTCCTATGAAGAAAAATCACATTTGCAGGGTTTTGAAGGTCTTGAGCAGAAATTCATCAACGATATCATGAAATTAGCCAAAGAACA GAGTGATGCTGAAGATTCAGAGATAGCTAGACATAAAGAGCATGAGGAACAACTAGCAGGACTTCGAGCTAGACATGGAAGTCGTAAAGAGGAAGTGCTT CAGAAAGAGTCGCAAGCACGGCGACAGCGATATCAGAAGGCAGTCAGAGATCTTTACGGAAGCAATAAGAGCATGGCCCCTGGAGAGTGCCATGGTTGTA GTGCACGTGCAGGTTCAGCTCAGCATGCTTACAAGGCCAGCCATATCGAGTCTTACCAGGAGCAGGCTCGGTACCTTGGAAACATCAGGGATCAGGGATT TGAACCACGAGACTCATATCCTCCTGGCGGGCGACGCCTATATGATACAACCACACACTATCGTTGA
AA sequence Show only first row Show all	>Lus10000457 pacid=23174752 polypeptide=Lus10000457 locus=Lus10000457.g ID=Lus10000457.BGIv1.0 annot-version=v1.0 MDTDCVLTTMQAGLDFWEMRRQGQYADSGSTAYGGAQMQHISSQRVEQDSDQFQGQLEAFTPERETSFTSSKPDGQWRWVRDDPKAANSVATQMFNEGQV VDASRAYFQGKRSDSHMLLEQQGNIDPRSRSREEDGQSSYEEKSHLQGFEGLEQKFINDIMKLAKEQSDAEDSEIARHKEHEEQLAGLRARHGSRKEEVL QKESQARRQRYQKAVRDLYGSNKSMAPGECHGCSARAGSAQHAYKASHIESYQEQARYLGNIRDQGFEPRDSYPPGGRRLYDTTTHYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22040			unknown protein		Lus10000457 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	3.9	0.8323
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015864 [exp]	5.7	0.8060
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	7.7	0.7894
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	7.9	0.8292
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	9.1	0.8317
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	9.2	0.8211
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	9.9	0.8190
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10042574 [exp]	13.8	0.8144
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	14.7	0.8200
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	15.9	0.8156

Compare expression of checked genes

Lus10000457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.