Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015034 [exp] 147 / 5e-42 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000458 pacid=23169183 polypeptide=Lus10000458 locus=Lus10000458.g ID=Lus10000458.BGIv1.0 annot-version=v1.0 ATGGATCAGAAGGGGGCTGGGTTCTATTTCCGGGCCGGGCGGGAGGTGAAGGCCATAAGAGAAGATTTCCCGGTAAGGAAGAGAGCAAAAAGACGCTGTC ATCTATCTCGACCAATTTACCAAGGCGTTGGAAATCCAGACCGGCTGAGAGAATCAATCCAGACCGGCTCAGAGAATCACTGGCGCCTGCTAGCCCTTCG TTTCGCCAACAAAACAAAGAAGGCATCCTTGACGATTTCCCAGTCTTTCCCTGCCGAGCCCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTTCC CTTTCTATAACATACCCAGGCGCCCTCCTTTCCAATCTAAAAAAAATACCAATCAAATCAAACGGTTGGTGTGACATTGTACAGCTTCATCTGTTATTTT TTCGGCCCCAGGGGAGTTTACTCCGGCCCCAGGGGAGTTTACTCGACCCATTCCCCAGTCTCCCGCACTGCTCAAGTAAGTGTGCGACTCCGTATGAGGA CCTCCTTCCCTTCTGCCCACTCTTCGTTCACACGGTTCTCAAAGCAGAGGAGGAAGGGTGTAAGAAGGTACCACGAGCCCTCTGTCCCACACATCTATCC AGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAG ATCAACCCAGTTCCCGTTCTTTTCCTATGCACTCGCTTTATATATCCGACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGC CGATCATTCCACTGGCATGTTGCATTCACGCCTCCGTTTGACTCCCGCTCAGGGATGTAGTTATAGATACGTTAGTCTTAGTGGATTGTTGGCTCCACCT GTTATCTCCTTCTACAACATGTTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTACGGGTCAAGCACCTCCGAAAGAAACGGA GGACTTCATTCAGTGACTCCGCAATTGCTCTTTGA
AA sequence Show only first row Show all	>Lus10000458 pacid=23169183 polypeptide=Lus10000458 locus=Lus10000458.g ID=Lus10000458.BGIv1.0 annot-version=v1.0 MDQKGAGFYFRAGREVKAIREDFPVRKRAKRRCHLSRPIYQGVGNPDRLRESIQTGSENHWRLLALRFANKTKKASLTISQSFPAEPRLSSPFEVLPLPS LSITYPGALLSNLKKIPIKSNGWCDIVQLHLLFFRPQGSLLRPQGSLLDPFPSLPHCSSKCATPYEDLLPFCPLFVHTVLKAEEEGCKKVPRALCPTHLS RSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSRSFPMHSLYISDTQGRTRWEGSSPSLCPADHSTGMLHSRLRLTPAQGCSYRYVSLSGLLAPP VISFYNMLLSSPYSICHLVISASLRVKHLRKKRRTSFSDSAIAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000458 [exp]	0	1
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	2.8	0.7811
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	3.5	0.7657
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	6.9	0.7667
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	8.8	0.6877
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	10.2	0.6801
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	13.4	0.7655
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	14.0	0.7572
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	17.0	0.6509
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	17.0	0.7173
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	18.1	0.7415

Compare expression of checked genes

Lus10000458 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.