Plant FIBer expression Database

Lus10000462 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34000 160 / 2e-50 OHP2 one-helix protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017779
[exp]
260 / 1e-89 AT1G34000 173 / 2e-55 one-helix protein 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G196100
[exp]
165 / 5e-52 AT1G34000 154 / 8e-48 one-helix protein 2 (.1)
Potri.002G065000
[exp]
164 / 5e-52 AT1G34000 154 / 4e-48 one-helix protein 2 (.1)
PFAM info
Representative CDS sequence
>Lus10000462 pacid=23166271 polypeptide=Lus10000462 locus=Lus10000462.g ID=Lus10000462.BGIv1.0 annot-version=v1.0
ATGTCAGGGGCGTCTTCATTCCCACCGTGCATCAATCTCCGGAACCCATCCCACTCCTCATCCTCCTCTCCCTCCACTTCCGCCACCGCTACTTACATAA
ACTCCGTCTCTTTCAGATCATCCTACTATCACGGTGTCATCATTCGTGCCTCCCAAGCTGAAGGACCAATTCGTAGACCCGTCGCCCCTCCTCTTAGACA
GCCTTTGAAGCCTGCAGTTCCTCCTTCGTCTTCGCCTCCTCCTCCTCCTCCTACTCCTCCAGCTGTTGCCCAATTGGATATTTCTGGAGATAAGGGTTTT
GTTACTTTGGAATTTCAAAGGCAGAAGGCTAAAGAGCTACAGCAGTATTTCAAGCAGAAAAAGCTTGAAGAGGCCAATCTCGGTCCTTTGTTTGGCTTCC
TTCCCAAAAATGAGATTTCTAATGGAAGATGGGCAATGTTCGGTTTCTCTGTTGGATTGCTGACAGAGTATGCAACAGGGTCGGACTTTGTTGTTCAAGT
GAAGATCCTTTTCTCCAATTTCGGCATCTTAGACCTGGACTGA
AA sequence
>Lus10000462 pacid=23166271 polypeptide=Lus10000462 locus=Lus10000462.g ID=Lus10000462.BGIv1.0 annot-version=v1.0
MSGASSFPPCINLRNPSHSSSSSPSTSATATYINSVSFRSSYYHGVIIRASQAEGPIRRPVAPPLRQPLKPAVPPSSSPPPPPPTPPAVAQLDISGDKGF
VTLEFQRQKAKELQQYFKQKKLEEANLGPLFGFLPKNEISNGRWAMFGFSVGLLTEYATGSDFVVQVKILFSNFGILDLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G34000 OHP2 one-helix protein 2 (.1) Lus10000462
[exp]
0 1
AT1G15140 FAD/NAD(P)-binding oxidoreduct... Lus10007954
[exp]
2.2 0.9142
AT5G23060 CaS calcium sensing receptor (.1) Lus10000867
[exp]
2.4 0.9312
AT1G16080 unknown protein Lus10041625
[exp]
2.8 0.9310
AT2G27290 Protein of unknown function (D... Lus10013320
[exp]
7.2 0.9161
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Lus10009352
[exp]
7.5 0.9260
AT3G26070 Plastid-lipid associated prote... Lus10020982
[exp]
7.9 0.9138
AT4G14450 ATBET12 unknown protein Lus10021878
[exp]
8.8 0.9141
AT1G64890 Major facilitator superfamily ... Lus10024977
[exp]
10.9 0.8887
AT5G17170 ENH1 enhancer of sos3-1, rubredoxin... Lus10003157
[exp]
15.5 0.9114
AT1G29700 Metallo-hydrolase/oxidoreducta... Lus10035042
[exp]
16.2 0.9072

Lus10000462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.