Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15030 176 / 7e-51 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT1G53230 165 / 4e-47 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT2G31070 147 / 1e-40 TCP TCP10 TCP domain protein 10 (.1) AT4G18390 109 / 1e-26 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G30210 97 / 2e-22 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT3G02150 94 / 1e-21 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT5G60970 91 / 3e-20 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT5G08070 87 / 1e-19 TCP TCP17 TCP domain protein 17 (.1) AT1G67260 84 / 6e-18 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 84 / 1e-17 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002195 [exp] 134 / 3e-38 AT1G53230 40 / 1e-04 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Lus10023297 [exp] 103 / 6e-24 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 102 / 2e-23 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 91 / 5e-20 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10034679 [exp] 90 / 1e-19 AT5G60970 169 / 2e-49 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10032984 [exp] 84 / 5e-18 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10003078 [exp] 82 / 6e-17 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 81 / 2e-16 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10035055 [exp] 79 / 2e-16 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119400 [exp] 261 / 7e-85 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 258 / 1e-83 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 190 / 1e-56 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.011G096600 [exp] 183 / 1e-53 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G083100 [exp] 105 / 8e-25 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.004G065800 [exp] 102 / 8e-24 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.004G116100 [exp] 94 / 2e-21 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.017G094800 [exp] 93 / 8e-21 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.015G058800 [exp] 93 / 9e-21 AT5G60970 177 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Potri.010G130200 [exp] 88 / 1e-18 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10000463 pacid=23165448 polypeptide=Lus10000463 locus=Lus10000463.g ID=Lus10000463.BGIv1.0 annot-version=v1.0 ATGGGTAAAAGGAGCGGCGGCCGTGGCGGCGGTGGAGAAGGAGAAATCATCCAAGTCCAAGGAGGCCACATTGTTCGATCCACCGGCAGGAAAGACAGAC ACAGCAAAGTCTACACCGCCAAAGGTCCACGTGATCGGAGAGTCAGACTTTCCGCTCACACTGCCATCCAATTCTACGATGTTCAAGACCGCCTTGGATA CGATAGACCAAGCAAAGCCGTTGATTGGCTGATTAAAAAGGCTCAATCTTCCATCGACAAGCTAGCTCAGCTTCCTCCGTGGCACCCTCCTGCTAATACT AATGAGGGTTTGGAGCTGGAAATGGAACAAGAAAATGAAGAGGAGCAGAGTGCGGCCGTTACCGCAGAATCGGACTACAGCAGCAGCTTCCACCTCCAGA ACAGCGGCGGCGGCGGAGGCAGTGGGAACCATCCGACGGCATCGTTTCTTCATCCGGATGGAATTGCTGATACGATGAAATCCTTCTTCCCTACAAGCTC CTCTACCAACTTGTCCATGAATTTCCAGAGCTACCCTCCGGATTTGATCTCCAGGAGTTCGGCGAATCAAAGCCAGGATCTGGGTTTGTCCCTTCACTCT TTCGTTGACCACCCCCAATCGGGTCACGACGGCGGCAACCACCACCAGGGACTCTTCCAGGCCGGGTCGGGTGGGCCTGTCGGGTACGAGACGAATTTCC ACGATTGGAGCAACGAAACGAGCACGGAGAATAGAGGAGGAGCGTTTGGATTCAGCAATCATAATCCAAATCAGCTGGCGGCGGCGGCAGCGCAACATGC GATGATGGCCCAAGATGGTTCGTCGACGGCGTTTGCTGCATCGTCTTCTTCTTCTCAGAGGGGTCCCCTTCAGTCCAATGGGTTTTTCGGGCGCGCGTGG AACGATGTCGTTCCCATGGGCACGGAGAATCATCATAATCATCAACACCACAACCAACAACACCAAAGAGCATACGAGTTCCATCAGTCAGTGTTGTTCG GGAGTAGGTTTCTTGGGTCATCCGACGGAATTCATAATCAAGGGTTCAGAATTCCGGCCAGGATCCACGGCGGTGAGCAAGACGGCGGCTGCGGCGATAG GGCGGGATCCTCGTCTTCGCCCGGCGGCCGTTCAGCTGAGCATTGA
AA sequence Show only first row Show all	>Lus10000463 pacid=23165448 polypeptide=Lus10000463 locus=Lus10000463.g ID=Lus10000463.BGIv1.0 annot-version=v1.0 MGKRSGGRGGGGEGEIIQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQSSIDKLAQLPPWHPPANT NEGLELEMEQENEEEQSAAVTAESDYSSSFHLQNSGGGGGSGNHPTASFLHPDGIADTMKSFFPTSSSTNLSMNFQSYPPDLISRSSANQSQDLGLSLHS FVDHPQSGHDGGNHHQGLFQAGSGGPVGYETNFHDWSNETSTENRGGAFGFSNHNPNQLAAAAAQHAMMAQDGSSTAFAASSSSSQRGPLQSNGFFGRAW NDVVPMGTENHHNHQHHNQQHQRAYEFHQSVLFGSRFLGSSDGIHNQGFRIPARIHGGEQDGGCGDRAGSSSSPGGRSAEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	0	1
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	1.0	0.9616
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10008521 [exp]	7.5	0.8416
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	10.5	0.8280
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	10.6	0.8292
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	11.3	0.8068
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	13.6	0.8256
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	13.7	0.8408
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10004343 [exp]	14.9	0.7094
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	15.2	0.7742
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10038512 [exp]	18.0	0.7896

Compare expression of checked genes

Lus10000463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.