Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42560 137 / 3e-34 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT3G53040 66 / 2e-11 late embryogenesis abundant protein, putative / LEA protein, putative (.1) AT2G36640 57 / 1e-08 ATECP63 embryonic cell protein 63 (.1) AT2G03850 48 / 4e-06 Late embryogenesis abundant protein (LEA) family protein (.1) AT2G03740 43 / 0.0002 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002197 [exp] 563 / 0 AT2G42560 153 / 7e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10008638 [exp] 45 / 0.0001 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090300 [exp] 216 / 1e-63 AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Potri.013G118600 [exp] 192 / 2e-54 AT2G42560 91 / 5e-19 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Potri.015G060600 [exp] 48 / 1e-05 AT2G36640 200 / 2e-59 embryonic cell protein 63 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02987 [flax] [poplar] LEA_4 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10000465 pacid=23165446 polypeptide=Lus10000465 locus=Lus10000465.g ID=Lus10000465.BGIv1.0 annot-version=v1.0 ATGGCATCAGAGCAGCCAAGAAGAGTGAACAAGACCACCGAGAGGGAGGTTCATCTTGAGAAAGATAGAGTTCCAAAGATGGCTTCTCATTTTGAGTCCA TCATTCACGAATCCACCCCTCATGACTCCCACCATCTTCAGCAGCATTCGAGAGATGCCGACAATCAAACGACCAAGCCAACTTCTGGGGGTGGTAGCGG CGGCACCTACACTTTCGGCAAGTTTGAAATGTCGGAAGGAGGTGGAGGCCAAGAAGGCAGGGGAAGCCATAATACTGACGAAGAACAACTCTCTCTTAAT GAGATTGCCAAGCTCAGAGGCATTGCTCAGCAGAATTCCGCTGAGGCTTTGAATGCCGCTCACCAGAGGTATGAGCATTCTAAAGACAAAGGTGTCTCGC AGCCGCTCAATACTCAAGGAGCTCAAAAGGGATCCCAAGCCACTGAATCTGTTGGACAAGGAGCTCAGCGAGCTTCTCAGACTGTCCAAGAGAAAGGATC TCAAGCTGCAGAAGCTGCTCGTGGAGGAGCTCAGCGAGCTTCGCAGACTGTGCAAGGGAAAGGATCTCAAGCTGCAGAAGCTGCCCGTGGAGGAGCTCAG CGAGCTACTCAAACTATGCAAGAGAAGGCTTATCAAGCTAAAGATATTGCAGCTGAGAAAGGCACACAAGCAAAAGACACTGTTATGCAGGGTGCTCAAA GGACTTCCCAATACGCAGGGGAGAAGGCTGCTCAAGCAAGAGAAGCTGCTGCCCAAGGAGCTCAAAAGACTTCAGACTACATGACAGAGAAGGCGGCTCA GGCAAAGGACATAGTTGCAGGAGGAGCACAGAGGACATCGGAGTGCTTGACTGAGACAGGGAGAGCCACCAAGGACATCGTTGCAGAGAAAGCTTCTCGA GCAAAAGATACTGTAGCCGGAGGAGCACAGAGGACGTCAGGTTACATGACGGAGAAGGGGAGAGCGGCCAAGGACACTGTTGCAGGAGGGGCGCAGAGGA CGTCAGAGTATGCGGCGGACACAGGGAGAGCGGCTGCAGAGAAGAGCCAGGGCGTGGCGCAGACGGCGAAAGAGTATGCTGTGAAGGCGAAGGACTACAC TGTGGAGAAGGCTGTGGCTGCAAAGGACGTGACTATCGAAGGGAGCAAGCAGGCTGTTCACTATGTGGGGGAGGTGGCGGAGGATGTGAGGGAGAGAGCT GCTACCGCTGGGTGGACAGCGGCACACTACACTACGGAGAAGACTGTCGAAGGGACGAAGGCGGCTGCCAGAGCCGTTTTCGGAGCTGCGGAGTACGCAG GGCATAAGACTGCGGAGTTGGCGTCTAAGCCGCTGGGAGCAGTGACAAATGCGGCGGGGCAAACTGGAGAGACGGCGAAGGAGTATACAGCGAGGAAGAA GGATGAATCGCAGAGGGAATTGAATACCAGGAAGGCTACCACCGAGGGGGGAGCAGAGACGGGAGGAAGAGGGAGTGGCTTCACTGAGAAAACTACGACT GAGAAATTCTCAACAGGGGAGTCAGGGACCGAGGAGAAGAGAGGCGGGATGTTGGGAGCCATCGGGGAAACTATAGCGGAGATCACCAAGACTATGGTCA TCGGTTCTGACGATGCAGGAGCTGACACCGGTACCCAGGGAGGGTTTGAAGAGACTAGCAAGACGGAGTATAGTAAGCAGGAAAAGAATGTTGGATATTG A
AA sequence Show only first row Show all	>Lus10000465 pacid=23165446 polypeptide=Lus10000465 locus=Lus10000465.g ID=Lus10000465.BGIv1.0 annot-version=v1.0 MASEQPRRVNKTTEREVHLEKDRVPKMASHFESIIHESTPHDSHHLQQHSRDADNQTTKPTSGGGSGGTYTFGKFEMSEGGGGQEGRGSHNTDEEQLSLN EIAKLRGIAQQNSAEALNAAHQRYEHSKDKGVSQPLNTQGAQKGSQATESVGQGAQRASQTVQEKGSQAAEAARGGAQRASQTVQGKGSQAAEAARGGAQ RATQTMQEKAYQAKDIAAEKGTQAKDTVMQGAQRTSQYAGEKAAQAREAAAQGAQKTSDYMTEKAAQAKDIVAGGAQRTSECLTETGRATKDIVAEKASR AKDTVAGGAQRTSGYMTEKGRAAKDTVAGGAQRTSEYAADTGRAAAEKSQGVAQTAKEYAVKAKDYTVEKAVAAKDVTIEGSKQAVHYVGEVAEDVRERA ATAGWTAAHYTTEKTVEGTKAAARAVFGAAEYAGHKTAELASKPLGAVTNAAGQTGETAKEYTARKKDESQRELNTRKATTEGGAETGGRGSGFTEKTTT EKFSTGESGTEEKRGGMLGAIGETIAEITKTMVIGSDDAGADTGTQGGFEETSKTEYSKQEKNVGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42560			late embryogenesis abundant do...		Lus10000465 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	13.0	0.9044
AT4G34810			SAUR-like auxin-responsive pro...		Lus10012184 [exp]	16.2	0.9067
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	22.4	0.9065
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10006451 [exp]	23.6	0.8831
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	27.0	0.9048
					Lus10024349 [exp]	31.3	0.9025
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	34.3	0.8797
AT3G03200	NAC	ANAC045	NAC domain containing protein ...		Lus10033650 [exp]	37.3	0.9018
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	40.6	0.9015
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	45.0	0.8958

Compare expression of checked genes

Lus10000465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.