Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 293 / 6e-100 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 281 / 2e-97 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 273 / 7e-92 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 253 / 1e-83 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 216 / 8e-71 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 216 / 2e-69 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 207 / 6e-66 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 196 / 3e-61 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G54260 173 / 1e-52 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT2G30010 170 / 3e-51 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002198 [exp] 409 / 2e-145 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 323 / 1e-111 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10013929 [exp] 263 / 9e-88 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 261 / 2e-87 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 261 / 3e-87 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10017670 [exp] 207 / 1e-68 AT2G42570 192 / 1e-60 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10020786 [exp] 206 / 5e-67 AT2G30900 298 / 1e-100 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10009209 [exp] 204 / 5e-65 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10024176 [exp] 204 / 1e-64 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 322 / 7e-111 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 312 / 4e-107 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 279 / 3e-94 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 269 / 3e-90 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 239 / 2e-78 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 230 / 7e-75 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 223 / 2e-72 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 223 / 3e-72 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 219 / 8e-71 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.009G072800 [exp] 210 / 8e-67 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10000466 pacid=23165447 polypeptide=Lus10000466 locus=Lus10000466.g ID=Lus10000466.BGIv1.0 annot-version=v1.0 ATGCTGTACAGAACTCAATACTTGGTGGACATCGTGAACGACAAGAAATACGGGCGAATCCTGAAGCTGGATTCGATGGCTGGCGACGGCAAGGCCTGGC AGGGAATGGACGTGTTGGTGTTCAACTCGTGGCACTGGTGGACTCACACTGGCAACACTCAGCTGTGGGATTACATCCAAGACGGCAACAAAATGTACAA AGACATGAACAGGCTCATTGCATACTACAAAGGCATGACAACTTGGGGCAGATGGGTCAACCGAAATGTAGATCCTTCCAAGACCAAAGTCTACTTCCAG GACATCTCCCCTACTCATTATGAGGGAAGGGAGTGGAACCAGCCAACTGAGTCATGTTTGAAGCAGACTCAGCCAATCATGGGAAGCAAGTACCCTGCGG GGATGCCTATGGCGTGGACAGTTGTGAACAAGGTGTTGAGCGGGGTCAAGAAGCCAGTTTACCTTCTGGACATCACTGGTCTTTCACTGTACAGAAAGGA TGCTCATCCGGGTCAATATAGTAGCATCAACGGTGGTGATGACTGCAGCCATTGGTGCCTCCCTGGACTCCCTGATACTTGGAACATACTGCTCTACTCA GTTTATGTTAGTTAA
AA sequence Show only first row Show all	>Lus10000466 pacid=23165447 polypeptide=Lus10000466 locus=Lus10000466.g ID=Lus10000466.BGIv1.0 annot-version=v1.0 MLYRTQYLVDIVNDKKYGRILKLDSMAGDGKAWQGMDVLVFNSWHWWTHTGNTQLWDYIQDGNKMYKDMNRLIAYYKGMTTWGRWVNRNVDPSKTKVYFQ DISPTHYEGREWNQPTESCLKQTQPIMGSKYPAGMPMAWTVVNKVLSGVKKPVYLLDITGLSLYRKDAHPGQYSSINGGDDCSHWCLPGLPDTWNILLYS VYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31110		TBL40	TRICHOME BIREFRINGENCE-LIKE 40...		Lus10000466 [exp]	0	1
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10038370 [exp]	1.0	0.9788
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10002198 [exp]	1.4	0.9690
					Lus10026494 [exp]	3.2	0.9592
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	4.2	0.9664
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035256 [exp]	6.0	0.9608
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10005979 [exp]	6.3	0.9519
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	7.9	0.9558
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	8.5	0.9368
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	10.7	0.9569
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	11.6	0.9520

Compare expression of checked genes

Lus10000466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.