Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06200 83 / 3e-18 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G36400 84 / 7e-18 GRF ATGRF3 growth-regulating factor 3 (.1) AT4G37740 84 / 1e-17 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 82 / 4e-17 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 79 / 3e-16 GRF ATGRF7 growth-regulating factor 7 (.1) AT3G52910 77 / 1e-15 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G45480 67 / 5e-12 GRF ATGRF9 growth-regulating factor 9 (.1) AT4G24150 65 / 2e-11 GRF ATGRF8 growth-regulating factor 8 (.1) AT1G09060 43 / 0.0004 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT3G13960 0 / 1 GRF ATGRF5 growth-regulating factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004455 [exp] 447 / 3e-158 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10000473 [exp] 100 / 2e-23 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10033441 [exp] 100 / 2e-23 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10020352 [exp] 94 / 1e-21 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 95 / 3e-21 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 89 / 2e-20 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10028899 [exp] 79 / 3e-17 AT2G36400 117 / 1e-31 growth-regulating factor 3 (.1) Lus10011559 [exp] 80 / 4e-16 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 79 / 5e-16 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065000 [exp] 145 / 2e-40 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 141 / 4e-39 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 101 / 6e-24 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.006G143200 [exp] 101 / 7e-24 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 96 / 4e-22 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 89 / 8e-20 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.001G132600 [exp] 84 / 6e-18 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1) Potri.003G100800 [exp] 83 / 8e-18 AT4G37740 140 / 2e-37 growth-regulating factor 2 (.1) Potri.014G012800 [exp] 84 / 2e-17 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.006G115200 [exp] 83 / 2e-17 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC
Representative CDS sequence Show only first row Show all	>Lus10000468 pacid=23163092 polypeptide=Lus10000468 locus=Lus10000468.g ID=Lus10000468.BGIv1.0 annot-version=v1.0 ATGCAAGAGGAGAAGAAGGAAATCCAAGGGGGTTATTGTCATCTTCTCATCACCATCCAATATTCACAGCAACACAATGGCAGGAACTGGAGCACCAAGC TCTCATCTACAAGTATATGGTCTCTGGAGTTCCAATCCCACTTCAACTACTCTTCTCTACTGTATCCTCGTCCTCTCTCCAATATCCAAGTGGGTAATAG GATAAAAGGAGACCCAGAACCAGGAAGGTGCAGAAGAACCGACGGTAAGAAGTGGAGGTGCTCCAAGGAAGCTAATTATCCCAACTCCAAATACTGTGAG AAACACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCTCCTTCCTCTTCATTGACAAACATGAATCTTGTTAACCCTTCTTCATATC CATTAATCTCTCCACTTCTTTCATCCACATCAATTGATCAATCACCTCATCTCCACCAAGTTCCTAATATCCATAACCATACCGGCCTCCTTAATACTAA TTTCATCTACCCTCATCATCACAATAGTAGCTCTTCTTCTTCCTCCTCCTCCTCCAGAGATTGCTCAAATAGAGCTAATATTAGATCTGAGTTTTCCCCT CGCAGCACTACTCAGGCTAACCTCTTCAAAGATTACAGGTACTTTAATGGAATGAGAAATTACCATAATATTAAGCAGCCGCAGCAGCATAAGTTGATAT CCACAACTAGAAAATTAGGATATTGCAGTCCACAGTCAGAGTTTGAGAGCTTTTACGATTGCTATCCATCAAAGCAGCAGCAGCAGGAAAAGCATTGTTT TGTATTGGGTGCTGATTTCAAGTCATCTGCATCAGAAATTAGGCCAGTCAAGGTGGAGAAGTATAGTGGCAATAAAGAGATATGTCAATCAATATCACCA CCATCAGCTGATCATCATCATGAACAAACCCACAAGCCATTGCACCATTTCTTTGGTATAGGCGGTGGTAATAATTGCTCAGACTCTTGGCTGGATCTTG CATCAACCTCAACTAGACCTTCCTGA
AA sequence Show only first row Show all	>Lus10000468 pacid=23163092 polypeptide=Lus10000468 locus=Lus10000468.g ID=Lus10000468.BGIv1.0 annot-version=v1.0 MQEEKKEIQGGYCHLLITIQYSQQHNGRNWSTKLSSTSIWSLEFQSHFNYSSLLYPRPLSNIQVGNRIKGDPEPGRCRRTDGKKWRCSKEANYPNSKYCE KHMHRGKNRSRKPVEISPSSSLTNMNLVNPSSYPLISPLLSSTSIDQSPHLHQVPNIHNHTGLLNTNFIYPHHHNSSSSSSSSSSRDCSNRANIRSEFSP RSTTQANLFKDYRYFNGMRNYHNIKQPQQHKLISTTRKLGYCSPQSEFESFYDCYPSKQQQQEKHCFVLGADFKSSASEIRPVKVEKYSGNKEICQSISP PSADHHHEQTHKPLHHFFGIGGGNNCSDSWLDLASTSTRPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	1.0	0.9135
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10003541 [exp]	3.9	0.9050
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	6.3	0.8494
AT5G59010			Protein kinase protein with te...		Lus10016454 [exp]	7.9	0.9056
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	8.5	0.8065
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	17.3	0.8446
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	17.4	0.8827
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	19.5	0.8314
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	24.6	0.8524
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	26.2	0.8402

Compare expression of checked genes

Lus10000468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.