Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 372 / 8e-129 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 134 / 2e-36 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 127 / 9e-34 SPDS2 spermidine synthase 2 (.1) AT5G53120 103 / 7e-25 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033437 [exp] 590 / 0 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004913 [exp] 370 / 8e-128 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010538 [exp] 370 / 9e-128 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026457 [exp] 371 / 1e-127 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 127 / 7e-34 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10029169 [exp] 122 / 9e-32 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 121 / 2e-31 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 118 / 3e-30 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 107 / 4e-26 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222200 [exp] 382 / 2e-132 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G089200 [exp] 369 / 3e-127 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 363 / 3e-125 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G147200 [exp] 130 / 1e-34 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G094600 [exp] 128 / 5e-34 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 105 / 1e-25 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 92 / 8e-21 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10000469 pacid=23170845 polypeptide=Lus10000469 locus=Lus10000469.g ID=Lus10000469.BGIv1.0 annot-version=v1.0 ATGCGGGTGGTTGGGTTGAGAGCTTTTCTGGTGCTGTACATCGGGGCCCTTGCTCCAGGGGCAGCCTTGCCGCCGGCGGAGGAACAACCAGCTGAAGGGG ACAACGTGGCGGCCGCACAGCAGGAAGAAGAAGGTGGCGCCGACATTTGGTTCCATGAAGAAGTTGACTCCCATCTCAAGCTCTCCTACGCTATCAAAGG TGTGCTACATTCCGGTACCAGCCCGTACCAACAAGTCGACCTCATCGACACCAAGCACTTTGGAAAGGTTTTGTTGATTGACGGCAAAGTACAAAGTGCT GAAAGCGACGAGTTTATTTACCATGAGCTCCTCGTCCATCCTCCCCTCTTGCTCCACCCTAACCCGAAAAAAGTGTTCATAATGGGAGGAGGAGAAGGAT CGACGGCTCGAGAGGTGCTGAACCACGCGAGTGTGGAGAAAGTGGTGATGTGCGACATCGACAGTGTGGTTGTTGATTTCTGCCGCGCTCATCTCGCCGC CAACGCACATTCCTTTACAGATCCCAGGCTCCAAGTCGTCATCAATGATGCTAAGGCTGAGTTGGAAAAGACAACGGATGATAGATATGACGTGATTATA GGAGACTTGGCGGACCCATTGGATGGTGGGCCATGCAACCAGCTCTACACTAAATCATTTTACGAGCGAATCGTCAAGCCCAAGCTCCATCCTAATGGCA TTTTTGTCACCCAAGCTGGGCCAGGAGGAGTTCCTTCTTCCCACAAGATCGTCTTCGCCTCCATTTACAACACCTTGAAGCAGGTTTTCAAGTTTGTGGT GCCATACACCACTCATATCCCGTCTTACATGGATACTTGGGGATGGATCATCGCGTCCGATGAAGCAGTGGGGTTGGATGTGCAAGAAATTGACAAAAGG ATTGGAGAAAGGCTGAAGAGCGCCCCTCTCTACTTTGATGGTGCTTCATTCATGGCTTCCACAGTCATGAACAAGATCGTTCGTACGTCGCTGGCGGAGG AGAAGCATGTTTTCACCGAAAAAGATGGGAGGTTCCTTCACGGCCATGGAGTTGCTGCTGCCGCCGACAAAATCAACGAGTGA
AA sequence Show only first row Show all	>Lus10000469 pacid=23170845 polypeptide=Lus10000469 locus=Lus10000469.g ID=Lus10000469.BGIv1.0 annot-version=v1.0 MRVVGLRAFLVLYIGALAPGAALPPAEEQPAEGDNVAAAQQEEEGGADIWFHEEVDSHLKLSYAIKGVLHSGTSPYQQVDLIDTKHFGKVLLIDGKVQSA ESDEFIYHELLVHPPLLLHPNPKKVFIMGGGEGSTAREVLNHASVEKVVMCDIDSVVVDFCRAHLAANAHSFTDPRLQVVINDAKAELEKTTDDRYDVII GDLADPLDGGPCNQLYTKSFYERIVKPKLHPNGIFVTQAGPGGVPSSHKIVFASIYNTLKQVFKFVVPYTTHIPSYMDTWGWIIASDEAVGLDVQEIDKR IGERLKSAPLYFDGASFMASTVMNKIVRTSLAEEKHVFTEKDGRFLHGHGVAAAADKINE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10000469 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030616 [exp]	1.0	0.9447
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	2.0	0.9348
AT2G21400		SRS3	SHI-related sequence3 (.1)		Lus10017492 [exp]	5.5	0.8872
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	5.5	0.9391
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10030872 [exp]	6.3	0.9184
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	6.8	0.9407
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	11.8	0.8881
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	14.0	0.9320
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	17.2	0.8889
AT5G42785			unknown protein		Lus10002541 [exp]	20.9	0.8986

Compare expression of checked genes

Lus10000469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.