Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06210 1292 / 0 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT3G04240 59 / 2e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 49 / 1e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G37130 43 / 0.0008 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033440 [exp] 1645 / 0 AT2G06210 1499 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Lus10004779 [exp] 57 / 9e-08 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 56 / 1e-07 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 52 / 2e-06 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033182 [exp] 51 / 4e-06 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 50 / 5e-06 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10042152 [exp] 50 / 9e-06 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10017009 [exp] 48 / 3e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004242 [exp] 47 / 4e-05 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143300 [exp] 1384 / 0 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) Potri.013G051400 [exp] 53 / 7e-07 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G234900 [exp] 52 / 1e-06 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.016G075700 [exp] 50 / 6e-06 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 50 / 7e-06 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.019G025600 [exp] 48 / 2e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10000471 pacid=23170844 polypeptide=Lus10000471 locus=Lus10000471.g ID=Lus10000471.BGIv1.0 annot-version=v1.0 ATGGCGTCGGTGTATATTCCTGTGCAGAACTCCGAGGAGGAGGTAAGAGTGGTCCTGGATCAGCTGCCGCGGGATGCCTCTGATATTATCGACATTCTAA AGGCCGAGCAAGCTCCTCTCAATTTGTGGCTAATTATTGCGAGGGAATACTTTAAACAAGGGAAGGTTGAACAGTTCCGGCAGATATTGGAAGAAGGATC AAGTCCTGATATTGATGAATATTATGCCGATGTTAGATATGAGAGGATCGCTATCCTCAATGCCCTTGGCGCTTACAATTGCTACCTTGGAAAGATTGAG ACAAGACAAAAAGAAAGGGAGGAATATTTCATACAGGCTACCAGGCATTATAACAAAGCTTCTAGGATTGACATGCATGAACCTTCTACTTGGATTGGGA AAGGTCAGCTTCTACTGGCCAAGGGTGACCTAGAACAGGCTTCTTCTGCTTTTAGGATTGTATTAGATGGAGATCGTGATAATGTACCAGCTCTATTGGG TCAGGCTTGTGTTGAGTTTAATCGTGGGAGTTACAGTGAATCGCTGTCATTGTATAGGAGAGTATTACGAATATTTCCTGATTGTCCTGGACCTGTCAGG CTTGGTATCGGTCAGTGTCAATATAAGATGGGCCGCTTTGAAAAAGCCCGAAAGGCATTTGAACGGGTTGTACAGGCAAATCCAGACAATGTTGAGGCTC TAGTTGCACTAGCAATTTTGGACTTGCAAACAAATGAAGCTGCTCATACAAGGAACGGGATGGAAAGAATGAAACAAGCTTTTGAGATTTACCCGTACTG TCCAATGGCTCTTAATTACCTAGCCAATCACTTTTTCTTCACTGGTCAGCACTTCTTAGTTGAGCAACTGATGGAAACTGCACTGGCTGTCACCAATCAT GGGCCTACAAAGTCACATTCGTACTATAATTTAGCTCGTTGTTACCATAGCAAGGGCGATTATAAAGCAGCCTTAAGATATTACCGTGCTTCAGTCCAGG AAATAACTAAGCCCAGTGAATTTGTGTTCCCGTATTTTGGTTTGGGTCAAGTACAACTAAAGTTAGGAGATACAAAGAGCGCCGTGTCAAATTTTGAAAA GGTTTTGGAGGTTTACCCGGATAATTGTGACACTTTGAAAGTTCTCGGACATGTATATGTTGGGCAGCCCGAAAAAGCCAAGGATTTTTTGAAGAAGGCT ACAAAAATCGATCCTTGTGACGCCCAGGCATTTCTTGATCTGGGGGAGTTGTTAATCACGTCTGATACTGCAGCTGCGCTTGATTCATTCAAGATGGCAT CCAAACTAATGAAGAAGCAAGATGTGCCAGTGGAAGTGCTGAATAACATTGGTGTCATCCATTTTGAAAGGGAAGAGCTTGAGGATGCTCTTGTAGCTTT TAAAGAGGCACTAGGTGATGGTTTATGGCTCAGTTTCCTTGATGGTACAAGAAAGATCACTTCATCTGTACTTCAGTACAAGGATGTGCAACTGTTTCAC CAACTTGAGGAAGATGGCGTTAATGTGGAACTACCATGGAATAAAGTCACACCTTTGTTTAACTTGGCCAGATTACTGGAGCAGTTGCACAAAACCGAAA CTGCTGGCATCTTTTACCGTCTGATATTGTTCAAGTATCCAGATTATGTAGATGGATACCTCCGGCTTGCTGCAATTGCAAAATCTAGGAATAATCTTCA CTTAAGCATTGAGCTGGTAAATGAGGCTCTGAAGTTGAATAACAAGTGCCCTAATGCATTATCAATGCTTGGTGAATTGGAGCTAAAAAATGATGATTGG GTTAAGGCGAAAGAAACATTGCGTGCTGCTAGTGATGCAATGGAAGGGAAAGATTCTTACGCTACACTTGCTCTGGGAAACTGGAACTATTTTGCTGCAT TGCGTAATGAGAAAAGGAACCCTAAACTGGAATCAACTCACTTGGAAAAAGCCAAGGAATTGTACTCCAGAGTCCTGGTTCAGCACACATCTAACTTGTA TGCAGCCAATGGAGCCGGAATAGTGTTGGCTGAAAAAGGGAACTTTGATGTAGCCAAAGATCTTTTCACACAGGTCCAGGAAGGTGCAAGTGGAAGTAGC TTTGTACAGTTGCCAGATGTTTGGATAAACTTGGCACATGTGTATTTTGCTCAGGGTAATAATGCCTTGGCTATAAAAATGTACCAGAATTGCTTACGGA AATACTATCATAATACCGACTATCAAATTCTCCTCTACATGGCACGCACTTATTATGAAGCTGAACAGTGGCAAGACTGCAAGAAAACATTATTGAGAGC CATACACTTAGCCCCTTCAAATTATACACTTAGGTTTGATACAGGTGTTGCAATGCAGAAGTTCTCTGCTTCCACACTACAGAAGACAAAGAGGACGGTA GATGAGGTTCTGCACCATTAG
AA sequence Show only first row Show all	>Lus10000471 pacid=23170844 polypeptide=Lus10000471 locus=Lus10000471.g ID=Lus10000471.BGIv1.0 annot-version=v1.0 MASVYIPVQNSEEEVRVVLDQLPRDASDIIDILKAEQAPLNLWLIIAREYFKQGKVEQFRQILEEGSSPDIDEYYADVRYERIAILNALGAYNCYLGKIE TRQKEREEYFIQATRHYNKASRIDMHEPSTWIGKGQLLLAKGDLEQASSAFRIVLDGDRDNVPALLGQACVEFNRGSYSESLSLYRRVLRIFPDCPGPVR LGIGQCQYKMGRFEKARKAFERVVQANPDNVEALVALAILDLQTNEAAHTRNGMERMKQAFEIYPYCPMALNYLANHFFFTGQHFLVEQLMETALAVTNH GPTKSHSYYNLARCYHSKGDYKAALRYYRASVQEITKPSEFVFPYFGLGQVQLKLGDTKSAVSNFEKVLEVYPDNCDTLKVLGHVYVGQPEKAKDFLKKA TKIDPCDAQAFLDLGELLITSDTAAALDSFKMASKLMKKQDVPVEVLNNIGVIHFEREELEDALVAFKEALGDGLWLSFLDGTRKITSSVLQYKDVQLFH QLEEDGVNVELPWNKVTPLFNLARLLEQLHKTETAGIFYRLILFKYPDYVDGYLRLAAIAKSRNNLHLSIELVNEALKLNNKCPNALSMLGELELKNDDW VKAKETLRAASDAMEGKDSYATLALGNWNYFAALRNEKRNPKLESTHLEKAKELYSRVLVQHTSNLYAANGAGIVLAEKGNFDVAKDLFTQVQEGASGSS FVQLPDVWINLAHVYFAQGNNALAIKMYQNCLRKYYHNTDYQILLYMARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDTGVAMQKFSASTLQKTKRTV DEVLHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	0	1
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	1.4	0.9530
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	2.4	0.9529
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	3.7	0.9230
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	3.9	0.9523
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	5.9	0.9345
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	6.3	0.9458
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	7.4	0.9145
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	11.2	0.9280
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	11.8	0.8940
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	12.6	0.9186

Compare expression of checked genes

Lus10000471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.