Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06210 114 / 3e-28 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033440 [exp] 223 / 2e-66 AT2G06210 1499 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143300 [exp] 123 / 1e-31 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000472 pacid=23170843 polypeptide=Lus10000472 locus=Lus10000472.g ID=Lus10000472.BGIv1.0 annot-version=v1.0 ATGGAAACGCACTTGATTTTACCTCTGCAGGTTCGGTCCACAGTTGATGAGCTGGAAAATGCTGTTCGTGTCTTTAGTCAGCTGTCTGCTGGGGCCAACC TTCAGATCCATGGTTTTGATGAGAAGAAGATAAACACCCATGTCGAGTATTGCAAACATTTATTAGAGGCTGCCAAGGTTCACAGAGAAGCTGCAGAGCG AGAAGAGCAGCAAACCAAGCAGAGGCAAGAAGTTGCTCGTCAGATGGCTTTAGCTGAAGAAGCACGTCGCAAGGCCGAAGAACAAAGGAAAGCTCAGATG GAGAGGAGGAAAATTGAGGATGAACGTAAACGGATCCGGCAACAAGAAGAGAACTTTCAGCGTGTCAAGGAACAATGGAAGAGTAGTTCAGCTTCTAAGC GGAAGGATAGATTGGATATCATTGATGATGATGAGGAGGTTGGGCAGAGTGGAGGTGGGAGGAGGAGGAAGAAAGGTGGAAAAAGGAGAAAGAAGGAGAA AACCTCAAAGTCGCAATATGACAAGGAAGAAGGAGAAGCAGAGATGGATGATCATGAAGAGGGGGAGGTGCATGAGAGTTATGGGCAGAATAGAAATGAG GCGGAAGATCAAGATCTTCTTGCTGCAGCTGGGCTTGAAGATTCTGATGCAGAGGATGAAGAGGCGGCAGCGGCTGCAACAGCTGCGAGGAGGAGGCGGG CATTGTCAGAATCGGAGGAGGAGGACGAACCGATCCCTTTAAGAGAGGATTCTAATGACGTGCACGTAAGTGATGGAGAAGCTGCTGCCAAGGATCATGG CGACGATTAA
AA sequence Show only first row Show all	>Lus10000472 pacid=23170843 polypeptide=Lus10000472 locus=Lus10000472.g ID=Lus10000472.BGIv1.0 annot-version=v1.0 METHLILPLQVRSTVDELENAVRVFSQLSAGANLQIHGFDEKKINTHVEYCKHLLEAAKVHREAAEREEQQTKQRQEVARQMALAEEARRKAEEQRKAQM ERRKIEDERKRIRQQEENFQRVKEQWKSSSASKRKDRLDIIDDDEEVGQSGGGRRRKKGGKRRKKEKTSKSQYDKEEGEAEMDDHEEGEVHESYGQNRNE AEDQDLLAAAGLEDSDAEDEEAAAAATAARRRRALSESEEEDEPIPLREDSNDVHVSDGEAAAKDHGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	0	1
					Lus10003603 [exp]	1.0	0.9383
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	3.0	0.9024
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	4.2	0.9026
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	5.0	0.8939
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10035631 [exp]	5.2	0.8773
AT1G31870			unknown protein		Lus10033140 [exp]	5.7	0.8970
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	8.8	0.8284
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	11.0	0.8686
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	12.8	0.8651
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	13.5	0.8833

Compare expression of checked genes

Lus10000472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.