Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13960 168 / 5e-48 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G06200 155 / 7e-45 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G37740 141 / 5e-37 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 122 / 4e-30 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 118 / 1e-29 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 107 / 8e-26 GRF ATGRF4 growth-regulating factor 4 (.1) AT5G53660 102 / 6e-24 GRF ATGRF7 growth-regulating factor 7 (.1) AT4G24150 90 / 3e-19 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G45480 79 / 8e-16 GRF ATGRF9 growth-regulating factor 9 (.1) AT1G09060 43 / 0.0004 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033441 [exp] 538 / 0 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10020352 [exp] 155 / 2e-43 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10037668 [exp] 150 / 1e-42 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10004455 [exp] 152 / 6e-42 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1) Lus10009533 [exp] 154 / 1e-41 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10015651 [exp] 146 / 2e-41 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10011558 [exp] 132 / 6e-34 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 130 / 3e-33 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10011559 [exp] 127 / 3e-32 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G143200 [exp] 298 / 3e-98 AT3G13960 188 / 7e-56 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 269 / 7e-87 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 191 / 2e-57 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.003G065000 [exp] 176 / 1e-51 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 162 / 2e-46 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 156 / 3e-44 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 140 / 3e-36 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 139 / 6e-36 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 135 / 9e-35 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.001G132600 [exp] 128 / 2e-33 AT4G37740 142 / 6e-38 growth-regulating factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10000473 pacid=23170847 polypeptide=Lus10000473 locus=Lus10000473.g ID=Lus10000473.BGIv1.0 annot-version=v1.0 ATGATGAGTGGAAGAAGCAGTAGCAGATTCCCCTTCACTGCAACTCAATGGCAGGAACTGGAACATCAAGCATTAATCTTCAAGTACATGGCTTCAGGAA TTCCCATCCCTCATGATCTCCTCTTCGCAATCAAAAGAAGCTCTTCTTCTTCTTCTTCATCTTCGTCTTGCTTGGACTCCTCCTCATCGCTTCTCTCCTC AAAGCTCTTCCCTTCCCAGTCTCCCCACATTGGGTGGAGCTGCTTCCAGTTGGGTTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGATGCAGAAGAACT GACGGCAAGAAATGGAGATGCTCAAAAGAAGCTTACCCTGATTCCAAGTACTGCGAGAGACACATGCACAGAGGTAAAAACCGTTCAAGAAAGCCTGTGG AAGTTGCTGCTACACAACAACAATCACCAATAACTCCATTAACAGCCAAGAACTCATCATCCCCATCACTACTACAATATCCTCACACCTCCCTCTCTTT GCTTTCTTCTTCTTCGTCTACAACTACTGATCACCATTACAAACATCCTCCTCCTCCTTCTGGATCTTACAACAACTACCACCATCATCAGTTCCTCTCG TCGTCCTCTCATGCAGCTGCTAGGCCACAACAGCCTAATGACTCCACCAATTTGCTTCTAGACTCTGCTGGATATTATTCTCTCTCCAACACCGATTACA GAAGGAACAGGAGCATTTACGGGTTAAAAGAAGAGGTGGACGAGCACGCATTCTTCTCGGAGACATCTGGCTCAATCAGAAATTCCGAGGAAGCGTGGCG ATTGAGTCCGCTGGCAATAAACTCTTCCTCGTCATCTTCATCTTCTTTCTCATCTTCAAAACAGAGGAGTTCATCTCATCAGCATCAGCATCATCATCAG GAGTCACAGAACCAGAACCAGAATGACTACTCTAATTCCCTCCAGCTCCAGAGCAGCGATAATATTGATAGTTGTACTAAGAATCAGAATAGTGGCTGTT ACCTTGACGCGGCCAAGTCATCCCAATCTATGATGAGATTTGACAGAGTGGTGAATAATGATCCCCAGAAGAGAGTTCATCGATTCTTTGATGAATGGCC GCTGAGGAACAAAGAATCGGCGTCGTGGCTACAACTGGATGATAAATCGTTCAACAACACAACTCTGTCCATCTCAATTCCCAACTCCACTTCCATGGAC TTGCCAATCTTCGGCTCAAGGACCTCCTATCATCAACAACATTAA
AA sequence Show only first row Show all	>Lus10000473 pacid=23170847 polypeptide=Lus10000473 locus=Lus10000473.g ID=Lus10000473.BGIv1.0 annot-version=v1.0 MMSGRSSSRFPFTATQWQELEHQALIFKYMASGIPIPHDLLFAIKRSSSSSSSSSSCLDSSSSLLSSKLFPSQSPHIGWSCFQLGLGRKIDPEPGRCRRT DGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVAATQQQSPITPLTAKNSSSPSLLQYPHTSLSLLSSSSSTTTDHHYKHPPPPSGSYNNYHHHQFLS SSSHAAARPQQPNDSTNLLLDSAGYYSLSNTDYRRNRSIYGLKEEVDEHAFFSETSGSIRNSEEAWRLSPLAINSSSSSSSSFSSSKQRSSSHQHQHHHQ ESQNQNQNDYSNSLQLQSSDNIDSCTKNQNSGCYLDAAKSSQSMMRFDRVVNNDPQKRVHRFFDEWPLRNKESASWLQLDDKSFNNTTLSISIPNSTSMD LPIFGSRTSYHQQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	0	1
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	2.2	0.9764
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	3.5	0.9707
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	4.6	0.9705
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	4.9	0.9672
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10042869 [exp]	5.1	0.9395
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	5.3	0.9518
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	6.0	0.9607
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10037027 [exp]	9.5	0.9572
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10021408 [exp]	9.8	0.9515
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	10.4	0.9575

Compare expression of checked genes

Lus10000473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.