Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 64 / 3e-13 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001042 [exp] 311 / 1e-110 AT1G24020 69 / 5e-15 MLP-like protein 423 (.1.2) Lus10001041 [exp] 289 / 9e-102 AT1G24020 64 / 2e-13 MLP-like protein 423 (.1.2) Lus10003451 [exp] 226 / 1e-76 AT1G24020 73 / 7e-17 MLP-like protein 423 (.1.2) Lus10001037 [exp] 185 / 1e-58 AT1G24020 68 / 7e-14 MLP-like protein 423 (.1.2) Lus10014241 [exp] 171 / 2e-55 AT1G24020 61 / 5e-12 MLP-like protein 423 (.1.2) Lus10001036 [exp] 178 / 2e-54 AT1G24020 68 / 2e-13 MLP-like protein 423 (.1.2) Lus10001033 [exp] 117 / 1e-33 AT1G24020 42 / 6e-05 MLP-like protein 423 (.1.2) Lus10010701 [exp] 115 / 5e-33 AT1G24020 80 / 3e-19 MLP-like protein 423 (.1.2) Lus10001032 [exp] 115 / 5e-33 AT1G24020 44 / 1e-05 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G096000 [exp] 58 / 4e-11 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10000474 pacid=23174334 polypeptide=Lus10000474 locus=Lus10000474.g ID=Lus10000474.BGIv1.0 annot-version=v1.0 ATGCCTACCGACTCCTTGGATGTTTATTTGAATTCGTCTGCTAATGATGTCTGGGGTGCCCTCACCGCTGCTACAACTGTTTTCCCCAAGGCCATGCGGG GTCTCTATCAACAAATTCGAAGTGTCGATGGTGATGGCTACACTGTTGGTTCTATGCGCACCATCACTTTCGGTCATCTTTTCAATCACGTTACGGGGAC AGCCACTGAGAGGATCCAAGACGTTGACCACGAAAAATTAACTATCGTGTCAACCTTTACTGAGGATGGAGGCTTCATTCCCAACTTATTTGACACATTT GACATCAAATTAACTGTTGTGAAATCTGCCCGCAACATGAGGGATGCTGGCTGGCTCATTAAGTGGGAGTTCACTTACGATGGAGCGAATGGTAATGCTA GCCTTAGCAACCTCAAAAATGTTATGAGTCAAGCTTTCAAAGATTTGGATACCTACCTAAGGAATCATCGTGGCGTCCGCCGCCCATGA
AA sequence Show only first row Show all	>Lus10000474 pacid=23174334 polypeptide=Lus10000474 locus=Lus10000474.g ID=Lus10000474.BGIv1.0 annot-version=v1.0 MPTDSLDVYLNSSANDVWGALTAATTVFPKAMRGLYQQIRSVDGDGYTVGSMRTITFGHLFNHVTGTATERIQDVDHEKLTIVSTFTEDGGFIPNLFDTF DIKLTVVKSARNMRDAGWLIKWEFTYDGANGNASLSNLKNVMSQAFKDLDTYLRNHRGVRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	2.0	0.8479
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10018922 [exp]	6.3	0.7664
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	8.2	0.8464
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	11.7	0.8228
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Lus10033488 [exp]	13.3	0.6849
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	17.7	0.7420
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	17.7	0.8096
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	27.9	0.8156
					Lus10027003 [exp]	28.1	0.7619
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035476 [exp]	31.0	0.7913

Compare expression of checked genes

Lus10000474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.