Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016424 [exp] 285 / 2e-88 ND / Lus10000479 [exp] 264 / 8e-79 ND / Lus10019691 [exp] 258 / 5e-78 ND / Lus10000478 [exp] 259 / 5e-77 ND 41 / 0.004 Lus10019690 [exp] 244 / 7e-73 ND / Lus10042237 [exp] 211 / 8e-59 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10026416 [exp] 202 / 1e-58 AT5G52410 42 / 0.001 unknown protein Lus10019212 [exp] 194 / 6e-54 ND / Lus10026417 [exp] 192 / 1e-53 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000475 pacid=23174330 polypeptide=Lus10000475 locus=Lus10000475.g ID=Lus10000475.BGIv1.0 annot-version=v1.0 ATGCCCCCTTTTGCTTTCAAGTCCGATATCCATTTTGTCGGGTCCTCCGACGGAACTATCCTCCAAGTCTACGAGCTAACCAAGCCTACCATCCATCTCT CTTCCGTTCATAAGTCCGATTGGAAGAAAATCACCACCATTGATACCGGTCTCGGGGAAGAAGAACAAGAACAAGAACAAGACGGCGACGATTATGATGA TGATGATGAAGACGTGACCTATGCTATGTCGTATCACGGCCTTCTTTTCTTTGACGGTCATGGAAAAATCGAGGGAGAAAAAACGTTGACTACGCTTGCC AAACATTTGAATAAGTTGCACTTTTTAGTGAATCCGAAAGGGTATTGTTTCCAACAAGCGTCTGAACTTGGAACGTACCCTGACTTGGGGATTCACTATC TTCGACTCAACGACCTGTTCAGCTGGCCTCGCTACGGGGTCCAGCTTGTGAAGATCAACCTGTGGAGTAGGTTAGAGCTTAAATTGAATCTCAAGCACAG GAACCCGTCGTCAAAGCCAATCTCATCGCCGGGTGCGATGATCAGTAAGGATAAATACGAGGAGTTGGAACGGTTGTTGAAGAAGAAGGACGAGGAACTG GAGAAGCTGAAGGAAGAGATGGAGGCCGACGACCAGGACGAGTTGCGAAAGGAGAATGAGGAGCTGCGGAAGGTAGTAAGAAAGAAGGACAGCGAACTAC GAACGCTTAGAAGAAACAAGGAAGACGACACTAAGAGGATAGAGGAGCTAGAGAAGCTTAACGACGAAATGGAGGAGGCGAACATAGCAAAGAGTGATGA ATTGCGAAAGTTGAAAGAGGAGCTGCGGAAGGTAATCAAAATAAACGAAGAAGCCAAAGCATCAAGGATCGAGGAGTTGGAGGGTGCGATTGAGGCGAAG AATGAAGAACTACGAAAGCTTAAAATGGAGAAAGTTGGTGATGATGAGAAATGCAGAGGAAGGATTGAAGAATTGGAGAAGATGAATGAAGCAAAAGCGG AAGAGTTGGCAAGGTTAATAAAGGAAAAGAAGAACAAGGATGAGGAAGATGCAAGAAGGGTAAAGGAACTAGAGAAGCTTAACGCAGAGATGGAGGAGGC GAACAGAGCGAAGAACGATGAGTTGCACAAGATGAAAGACGAGCTGCGGAAGATAATAAAAACGAACGAAGAAGCGAACACATCGAAAATCGAGGAGTTG GAGGGCGCGCTTGAAGAGAAGAACGAAGAATTACGAAAGCTTAAAAGGGAGAAAGATGCCGGTGGCCAGAAATGCAGAGCAAGGATTGAAGAACTAGAGA CGGAGGTGGGGAAGTTAACAGAGGAAAAGAAGAACAAGGATGAAGAGTTACAAAAGTGTGCAAAGGAAGTAGAGAAACTAAAAGCAGAAATGAAGAGGAA CGATGTAGAGCAAAAGGCTAAACAGAAGGTGGAGGCGGATGAGTTGCTGACGCTGCGTGAGAAAGTGAGGCATCTAACTAGAAGAAGGATATTACCAACT CAATCGATCACTTGTCATGCACAACACTACAGTAACGCGTTCAATTTGTTGATTGCCCCTAAGTTAATGGACAAGTTGCTGGCTTTGGACGTGACGCGAG TTTGGTTTATCGACGATAACAGCTACCAACGGCCATCTGCAGGTAGTTTGGTGATGTATACAGGCGGGGGGATTTTCGACGTGGAAGATTGGTGGACGGT GAGAGTGAGCTTACCCAGTGGCCAGATTGTGGTACTTGCTTATTACGACGGGAATCGTTCTCAGATTACTCTTCAGGGTGCTGTTGTTAACGTGCCGTTT TCGAGAGATACTGGTGTTTACCCGTTCAACCGGAGCTTCGTCCTGGTGTGTTTCGATTCGCTCGGATTGAGATTGGGTTTCATCTGCAGCTAG
AA sequence Show only first row Show all	>Lus10000475 pacid=23174330 polypeptide=Lus10000475 locus=Lus10000475.g ID=Lus10000475.BGIv1.0 annot-version=v1.0 MPPFAFKSDIHFVGSSDGTILQVYELTKPTIHLSSVHKSDWKKITTIDTGLGEEEQEQEQDGDDYDDDDEDVTYAMSYHGLLFFDGHGKIEGEKTLTTLA KHLNKLHFLVNPKGYCFQQASELGTYPDLGIHYLRLNDLFSWPRYGVQLVKINLWSRLELKLNLKHRNPSSKPISSPGAMISKDKYEELERLLKKKDEEL EKLKEEMEADDQDELRKENEELRKVVRKKDSELRTLRRNKEDDTKRIEELEKLNDEMEEANIAKSDELRKLKEELRKVIKINEEAKASRIEELEGAIEAK NEELRKLKMEKVGDDEKCRGRIEELEKMNEAKAEELARLIKEKKNKDEEDARRVKELEKLNAEMEEANRAKNDELHKMKDELRKIIKTNEEANTSKIEEL EGALEEKNEELRKLKREKDAGGQKCRARIEELETEVGKLTEEKKNKDEELQKCAKEVEKLKAEMKRNDVEQKAKQKVEADELLTLREKVRHLTRRRILPT QSITCHAQHYSNAFNLLIAPKLMDKLLALDVTRVWFIDDNSYQRPSAGSLVMYTGGGIFDVEDWWTVRVSLPSGQIVVLAYYDGNRSQITLQGAVVNVPF SRDTGVYPFNRSFVLVCFDSLGLRLGFICS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000475 [exp]	0	1
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	4.5	0.7746
AT3G20340			unknown protein		Lus10021518 [exp]	7.9	0.7625
					Lus10029048 [exp]	8.8	0.7350
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	25.6	0.7248
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	28.1	0.7324
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	29.2	0.7163
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	32.0	0.7216
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	33.5	0.7144
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	38.3	0.7264
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10024401 [exp]	42.7	0.7187

Compare expression of checked genes

Lus10000475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.