Plant FIBer expression Database

Lus10000477 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26340 176 / 3e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G220800
[exp]
226 / 1e-73 AT2G26340 178 / 2e-55 unknown protein
PFAM info
Representative CDS sequence
>Lus10000477 pacid=23174331 polypeptide=Lus10000477 locus=Lus10000477.g ID=Lus10000477.BGIv1.0 annot-version=v1.0
ATGGAAGCCACAATTCAAACTAGCTGCGCGAAAACAATCGGTATTCTGCTGTCCCAAAGGAAGAAGCCCAATAATAAATTGCAATCGGTAAGATGCGGAT
TGAACATGAGCAGACCAGAAATCTTGGAGAGTACCAACCGCCGGCGATTGCTATCCGTCACCGTCAGTACCCTCTTTGTTTCCCAGTTGCAGTTTCTGCT
TCCAACTAACAATGCAATTGCAGGCAGCTTGTTAGATAAGTACGTTAAAAGGAAGAAGCTTGACCCTCTTGAAGTGTATGTGCCGGCTGTGATATTAACT
GAGATGCAGATTAAGGATTTGGGGAAAGTTCTAGACGTTGATGAGCCTCAATTCAGCAGCTGCCGTTCTTTACTGAGGTCCGGTCCAGCAGGATCTCTTC
GTGTAAACATCCGAGCTGTAGCGCAATATGCAGCAGACGATGGAAACGGGAAGGCAGCATTCGATGATGTAGCTCAGTGTCTCAGAGCGCTGGAAGAGCT
AGATAACTTGCTGCTTCAAGCGTCGAGGAACAATCCAGGTGCCACAATTACGTCGATGAAAGCCAAAATTGTTGATGCTACTAACGCTTTGGAGAGCCTC
CTGAACACAGTTCCTCAAGAGGTACTGGATAAGGGGAAAGCCATTGCGGATGCCTACAATGCACCTGAAGAAGAAGATACACAACCACAGGTCCTACAAG
AGGACCCTCAACTCAAACAATGTGTTGAACAAGTTCAAAGATGGAAGGGGGAGTTTCAAGGAAGAGCTTTCGAGGGACGTGAAAGGGCTGCTGAGCTTAC
AGGAAGCCGCTTACTACAGAGTGAACGAAGAAGAATGGTTGGATCAAGCCCTTGA
AA sequence
>Lus10000477 pacid=23174331 polypeptide=Lus10000477 locus=Lus10000477.g ID=Lus10000477.BGIv1.0 annot-version=v1.0
MEATIQTSCAKTIGILLSQRKKPNNKLQSVRCGLNMSRPEILESTNRRRLLSVTVSTLFVSQLQFLLPTNNAIAGSLLDKYVKRKKLDPLEVYVPAVILT
EMQIKDLGKVLDVDEPQFSSCRSLLRSGPAGSLRVNIRAVAQYAADDGNGKAAFDDVAQCLRALEELDNLLLQASRNNPGATITSMKAKIVDATNALESL
LNTVPQEVLDKGKAIADAYNAPEEEDTQPQVLQEDPQLKQCVEQVQRWKGEFQGRAFEGRERAAELTGSRLLQSERRRMVGSSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26340 unknown protein Lus10000477
[exp]
0 1
AT4G39710 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex... Lus10016811
[exp]
1.7 0.9681
AT1G67700 unknown protein Lus10011383
[exp]
3.7 0.9709
AT4G34620 SSR16 small subunit ribosomal protei... Lus10027058
[exp]
4.4 0.9733
AT1G67700 unknown protein Lus10006442
[exp]
4.9 0.9667
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10039291
[exp]
6.3 0.9561
AT5G22340 unknown protein Lus10043400
[exp]
6.3 0.9668
AT4G09010 TL29, APX4 thylakoid lumen 29, ascorbate ... Lus10020942
[exp]
7.5 0.9565
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Lus10001861
[exp]
8.0 0.9669
AT1G65260 VIPP1, PTAC4 VESICLE-INDUCING PROTEIN IN PL... Lus10027068
[exp]
8.7 0.9468
AT5G53850 haloacid dehalogenase-like hyd... Lus10041928
[exp]
10.0 0.9536

Lus10000477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.