Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000479 [exp] 912 / 0 ND / Lus10016424 [exp] 243 / 5e-72 ND / Lus10019691 [exp] 240 / 9e-71 ND / Lus10004308 [exp] 203 / 2e-59 ND / Lus10000475 [exp] 205 / 3e-57 ND / Lus10019212 [exp] 202 / 1e-56 ND / Lus10019690 [exp] 198 / 1e-55 ND / Lus10004306 [exp] 191 / 1e-54 ND / Lus10019211 [exp] 187 / 7e-53 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000478 pacid=23174332 polypeptide=Lus10000478 locus=Lus10000478.g ID=Lus10000478.BGIv1.0 annot-version=v1.0 ATGCCTTTGTTTGCTTTCAAATCCAACACCCACTTTGTTACTTCCTCTGATGGAACTATCCTCCAAGTCTATGAGTTAACTAAGCCTCCCCATCAGCTTT CTTCCATCAAGAAGGCTGATTGGAAGCAAGTTGCCACCATTACCGCAAGTCTCGAAGAAGAAGAAGACAACGACGACGAAAAAGAAGAAGCAGAAGATGA CAATGATGTCGATAAAGAGGCGTCAGATGATAAATCATACAACGGTCTTTCGTTCTTAGATGGACATGGAAACATCAAGGAAGGAAAAGCTATGACTACC CTTGCTCAACATCTGAAGCAGTTACGCTTGTTAGTGAATCCTAAAGGGCATTGTTTCCAAGATGTATCCGAGCTTGGAATATACTCTGACTTTGGGATTC ACTACCTTCGACTGAACGATATGTTCAGTTGGCCTCGTCACAATATCAGCATTGTTCTGACGGGCACCATGTGGAGCCGGTTGGAGTTCAAGTACATTCC GCCCAAGCATCAGGGCGGTCCGTCAAAGTCAACAAAGCCGACCGTTGGTGGTGGTGTGAGTAAGGAGAAGTACGCCAAGTTGGAAATGTTGGTTAAGGAG AAAGAGGAGGAGCTAGAGAAGCTTAAAGAAGAGATGGAGGAGGCTAACGAGGCGAACGAGAAAGAATTGCAAAAGTTGAAGAAGGCATACGAAGATCAAC ACAAACAAGTACAGAAGAAGGATAAAGAACTGCGGACGCTGAAAAAGATGAAGGATGAGGAGGCGGCGAAGGCACAAAGGATAGAAGAGTTAGAAAAGCT GAATGAGGATCTGGAGGAGGCAAACAAAGCTAAAGATGAAGAATTGCAAAAATTAGCCAAGTCGAAGAACGTCGGGGAGATGCAGAGGCAATTAAAAAAG AAGGATGACGAATTGAAGATGCTTAAAAAGATGAAGGATGAAGAAGAGACGAAAACAAAAAGGATAGAAGAACTGGAGAAGCTTAACGAAGAGTTGGAGG AGGCAACTAAGGCAAAGGAGGAAGAACTACAAAAAATGAAGAAGAAGAAGCCGAATGAAGGAGCAAATAAGGCAACAAGAGTTGCGGAACTGGAGAAGTT GAAGGACGAGCTGGAGGATGTGATCGCAGCGAAAGATGAAGAACTCGAAAGGGTCAAAAAGGAGAAGGAAGAAGAGATTCGGAAGGTGTCAAAGAAAAAG GAAGTTGAGCTACGGGCGCTTAAAAATAAAAATGTCGACGAAACAGAAAAATCGAGACGGATCGAAGAGCTCGAAAAAACGGTAGAGGAGATGGAGGTAG CAAGCGTGGCGAGGGATGAAGAGTTGCAAAATTTGAAGAAGGGGAAGAATGAAGAGCTTCAGAAGGCGTTGAGGGAAAAGAATCACGAATTACGCATGCT TGAAAAGAAAAAGGGAGACGAGAAGAATAATGCAGAAGCGAAAGCACGAAAGGCAGAGGGCGAACTGCAAGAGGCAAAAGACAAGTTGAGTTTCAGTGTC GCGGAGGTAGCACAAGCCAACAAGGAATTGGAGCAATGTCAAAAGCTGTCGTGGGCGATTCTACCCGTCACAAACTTCTTACCGCAGAGCGCAGATGCTA AAGAGAAGTATCTAGCGACAAGGCAACGGTTTGCGCCAGAGAAGTTCTCTTGTAACCCTCTGTTGGGTTTTCCTTATGTTGCTAACTCGCCTAAATTGGT GGATAACATGTATAACTGGAGCAGCAACCGAGTTAAGTTGGTTGACGAGGAGAGCGCTAGTACCAACACATGGCCAGCTCCACCAACTATCGACATACGT ATCGGTAGGGGCGTCCAGGACTTCGACAGAAACAACTGGTGGTATGTGAAAACGACACACCCTGAAGGTGGCTTGACGATGCTGGTGTATTACGATGGGA ATCAAACCCAACTTACTCAGGCTAATCCCAGCTGCATCGTTCCCTTGCCATGTGCAAAGAATATTGAGTTTATCACTTGTACTTATCGTATGTCCATCTT TGATCTGACTCCATTGGGGTTCAGATTGGGTTTTACGTACCGCCCGTAA
AA sequence Show only first row Show all	>Lus10000478 pacid=23174332 polypeptide=Lus10000478 locus=Lus10000478.g ID=Lus10000478.BGIv1.0 annot-version=v1.0 MPLFAFKSNTHFVTSSDGTILQVYELTKPPHQLSSIKKADWKQVATITASLEEEEDNDDEKEEAEDDNDVDKEASDDKSYNGLSFLDGHGNIKEGKAMTT LAQHLKQLRLLVNPKGHCFQDVSELGIYSDFGIHYLRLNDMFSWPRHNISIVLTGTMWSRLEFKYIPPKHQGGPSKSTKPTVGGGVSKEKYAKLEMLVKE KEEELEKLKEEMEEANEANEKELQKLKKAYEDQHKQVQKKDKELRTLKKMKDEEAAKAQRIEELEKLNEDLEEANKAKDEELQKLAKSKNVGEMQRQLKK KDDELKMLKKMKDEEETKTKRIEELEKLNEELEEATKAKEEELQKMKKKKPNEGANKATRVAELEKLKDELEDVIAAKDEELERVKKEKEEEIRKVSKKK EVELRALKNKNVDETEKSRRIEELEKTVEEMEVASVARDEELQNLKKGKNEELQKALREKNHELRMLEKKKGDEKNNAEAKARKAEGELQEAKDKLSFSV AEVAQANKELEQCQKLSWAILPVTNFLPQSADAKEKYLATRQRFAPEKFSCNPLLGFPYVANSPKLVDNMYNWSSNRVKLVDEESASTNTWPAPPTIDIR IGRGVQDFDRNNWWYVKTTHPEGGLTMLVYYDGNQTQLTQANPSCIVPLPCAKNIEFITCTYRMSIFDLTPLGFRLGFTYRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000478 [exp]	0	1
					Lus10029181 [exp]	6.8	0.7577
AT3G14680		CYP72A14	"cytochrome P450, family 72, s...		Lus10019184 [exp]	54.3	0.7359
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	59.7	0.7216
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	84.4	0.7126
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	99.0	0.6601
					Lus10039778 [exp]	137.0	0.6968

Compare expression of checked genes

Lus10000478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.