Plant FIBer expression Database

Lus10000479 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000478
[exp]
919 / 0 ND 41 / 0.004
Lus10019691
[exp]
243 / 9e-72 ND /
Lus10016424
[exp]
242 / 2e-71 ND /
Lus10019212
[exp]
213 / 3e-60 ND /
Lus10004308
[exp]
203 / 3e-59 ND /
Lus10004306
[exp]
204 / 4e-59 ND /
Lus10000475
[exp]
208 / 2e-58 ND /
Lus10019211
[exp]
194 / 3e-55 ND /
Lus10019690
[exp]
192 / 2e-53 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10000479 pacid=23174335 polypeptide=Lus10000479 locus=Lus10000479.g ID=Lus10000479.BGIv1.0 annot-version=v1.0
ATGCCTTTGTTTGCTTTCAAATCCAACACCCACTTTGTTACTTCCTCTGATGGAACTATCCTCCAAGTCTATGAGTTAACTAAGCCTCCCCATCAGCTTT
CTTCCATCAAGAAGGCTGATTGGAAGCAAGTTGCCACCATTACCGCAAGTCTCGAAGAAGAAGAAGACAACGACGACGAAAAAGAAGAAGCAGAAGATGA
CAATGATGTCGATAAAGAGGCGTCAGATGATAAATCATACAACGGTCTTTCGTTCTTAGATGGACATGGAAAGATCGAGGAAGAAAAAGCTATGAATACC
CTTGCTCAACATCTGAAGCAGTTACGCTTGTTAGTGAATCCCAAAGGGTATTGTTTCCAGGATGTATCCGAGCTTGGAATATACTCTGACTTTGGGATTC
GCTACCTTCGACTGAACGATCTGTTCAGTTGGCCTCGTCACAATATCAGCCTTGTTCTGACGGGCACTGTGTGGAGCCGGTTGGAGTTCAAGTACATTCT
GCCCAAGCATCAGGGCGGTCCGTCAAAGTCCACAAAGCCGACCGTTGGTGGTGGTGTGAGTAAGGAGAAGTACGCCAAGTTGGAAATGTTGGTTAAGGAG
AAAGAGGAGGAGCTAGAGAAGCTTAAAGAAGAGATGGAGGAGGCTAACGAGGCGAACGAGAAAGAATTGCAAAAGTTGAAGAAGGCATACGAAGATCAAC
ACAAACAAGTACAAAAGAAGGATAAGGAACTGCGGGCGCTGAAAAAGATGAAGGATGAGGAGGCGGCGAAGGCACAAAGGATAGAAGAGCTAGAAAAGCT
GAATGAGGATCTGGAGGAGGCAAACAAAGCTAAAGATGAAGAATTGCAAAAATTAGCCAAGTCGAAGAACGTCGGGGAGATGCAGAGGCAATTAAAAAAG
AAGGATGACGAATTGAAGATACTTAAAAAGATGAAGGAAGAAGAAGAGACGAAAACAAAAAGGATAGAAGAACTGGAGAAGCTTAACGAAGAGTTGGAGG
AGGCAACTAAGGCAAAGGAGGAAGAACTACAAAAAATGAAGAAGAAGAAGCCGAATGAAGGAGCAAATAAGGCAACAAGAGTTGCGGAACTGGAGAAGTT
GAAGGACGAGCTGGAGGATGTGATCGCAGCGAAAGATGAAGAACTCGAAAGGGTCAAAAAGGAGAAGGAAGAAGAGATTCGGAAGATGTCAAAGAAAAAG
GAAGTTGAGCTACGGGCGCTTAAAAATAAAAATGTCGACGAAACAGAAAAAAAATCGAGACGAATCGAAGAGCTCGAAAAAACGGTAGAGGAGATGGAGG
TAGCAAACGTGGCGAGGGATGAAGAGTTGCAAAATTTGAAGAAGGGGAAGAATGAAGAGCTTCAGAAGGCGTTGAGAGAAAAGAATTGCGAATTATGCTT
GCTTGAAAAGAAAAAGGAAGACGAGATGAATAATGCTGAAGCGAAAGCGCGAAAGGCAGAGGGCGAACTGCAAGAGGCAAAAGACAAGTTGAGTTTCAGT
GTCGCGGAGGTAGCACAAGCCAACAAGGAATTGGAGCAATGTCAAAAGCTGTCTTGGGCGATTCTACCCGTCACAAACTTCTTAACGCAGAGCGCAGATG
CTAAAGAGAAGTATCTAGCGACAAGGCAACGGTTTGCGCCAGAGAAGTTCTCTTGTAACCATCAGTTGCCTTTTCCTTATGTTGCTAACTCGCCTAAATT
GTTGGATAACATGTATAACTGGAGCAACAACCGAGTTAAGTTGGTTGACGAGGAGACCACTAGTACCAACACATGGCCAGCTCCACCAACTATCTACATA
CGTATCGGTAGTGGCGTCCAGGATTTCGACAGAAACAACTGGTGGTATGTGAAAGCGACACACCCTGAAGGTGGCTTGACGATGTTGGTGTATTACGATG
GGAATCAAACCCAACTTACTCAGGCTAATCCCAGCTGCATCGTTCCCTTGCCATGTGCAAAGAATATTGAGTTTATCACTTGTACTTATCGTATGTCCAT
CTTTGATCTGACTCCATTGGGGTTCAGATTGGGTTTTACGTACCGCCCGTAA
AA sequence
>Lus10000479 pacid=23174335 polypeptide=Lus10000479 locus=Lus10000479.g ID=Lus10000479.BGIv1.0 annot-version=v1.0
MPLFAFKSNTHFVTSSDGTILQVYELTKPPHQLSSIKKADWKQVATITASLEEEEDNDDEKEEAEDDNDVDKEASDDKSYNGLSFLDGHGKIEEEKAMNT
LAQHLKQLRLLVNPKGYCFQDVSELGIYSDFGIRYLRLNDLFSWPRHNISLVLTGTVWSRLEFKYILPKHQGGPSKSTKPTVGGGVSKEKYAKLEMLVKE
KEEELEKLKEEMEEANEANEKELQKLKKAYEDQHKQVQKKDKELRALKKMKDEEAAKAQRIEELEKLNEDLEEANKAKDEELQKLAKSKNVGEMQRQLKK
KDDELKILKKMKEEEETKTKRIEELEKLNEELEEATKAKEEELQKMKKKKPNEGANKATRVAELEKLKDELEDVIAAKDEELERVKKEKEEEIRKMSKKK
EVELRALKNKNVDETEKKSRRIEELEKTVEEMEVANVARDEELQNLKKGKNEELQKALREKNCELCLLEKKKEDEMNNAEAKARKAEGELQEAKDKLSFS
VAEVAQANKELEQCQKLSWAILPVTNFLTQSADAKEKYLATRQRFAPEKFSCNHQLPFPYVANSPKLLDNMYNWSNNRVKLVDEETTSTNTWPAPPTIYI
RIGSGVQDFDRNNWWYVKATHPEGGLTMLVYYDGNQTQLTQANPSCIVPLPCAKNIEFITCTYRMSIFDLTPLGFRLGFTYRP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000479
[exp]
0 1
AT3G22060 Receptor-like protein kinase-r... Lus10039698
[exp]
18.7 0.6968
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Lus10012511
[exp]
25.5 0.6563
AT1G71450 AP2_ERF Integrase-type DNA-binding sup... Lus10041050
[exp]
28.0 0.6581
AT3G22060 Receptor-like protein kinase-r... Lus10039699
[exp]
31.6 0.6605
AT4G24110 unknown protein Lus10017328
[exp]
47.5 0.6574
AT4G27290 S-locus lectin protein kinase ... Lus10014813
[exp]
51.9 0.6358
AT2G47190 MYB AtMYB2 myb domain protein 2 (.1) Lus10038062
[exp]
58.2 0.6446
AT4G23030 MATE efflux family protein (.1... Lus10027417
[exp]
59.2 0.6483
Lus10021406
[exp]
66.3 0.6312
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Lus10006323
[exp]
69.6 0.6055

Lus10000479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.